PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4kn5A_

Fold library id	PDB Header	Molecule	Title
c4kn5A_	PDB header: hydrolase	Chain: A: PDB Molecule: methylthioadenosine nucleosidase;	PDBTitle: crystal structure of a putative methylthioadenosine nucleosidase from2 weissella paramesenteroides atcc 33313 (target nysgrc-029342 )

Links to external resources
Added to library: Sat Jun 8 10:24:33 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y F Q S X R Y G V I N A X A E E K A A L V D A X I D E K K T T I A G K L F H H G K I G H V D V V V V E S G I G K V A S A L T T T L L I T N F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V D A V I N S G S A G A L G T D L R I G D I V I A D Y L A Y A D A D A R A F G Y A Y G Q V P Q Q P A R F K A D T D L S N D L S E S Y E K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
T T
S S
G G G T
T T
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T D A R L V R G L V V T S D S F I A S N E Q K Q T I L T H F P E A Q S A E X E G A S I A Q V A N Y F D V P F A V V R A I S D N A N G E A G X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T S S T T
S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence T F D D F I V E A G Q Q S A Q V L I N F F E A Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	F	Q	S	X	R	Y	G	V	I	N	A	X	A	E	E	K	A	A	L	V	D	A	X	I	D	E	K	K	T	T	I	A	G	K	L	F	H	H	G	K	I	G	H	V	D	V	V	V	V	E	S	G	I	G	K	V	A	S	A	L	T	T	T	L	L	I	T	N	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																													T	T									T	T										S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	D	A	V	I	N	S	G	S	A	G	A	L	G	T	D	L	R	I	G	D	I	V	I	A	D	Y	L	A	Y	A	D	A	D	A	R	A	F	G	Y	A	Y	G	Q	V	P	Q	Q	P	A	R	F	K	A	D	T	D	L	S	N	D	L	S	E	S	Y	E	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S												S	T	T			T	T											S	S				G	G	G	T			T	T			T	T	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	D	A	R	L	V	R	G	L	V	V	T	S	D	S	F	I	A	S	N	E	Q	K	Q	T	I	L	T	H	F	P	E	A	Q	S	A	E	X	E	G	A	S	I	A	Q	V	A	N	Y	F	D	V	P	F	A	V	V	R	A	I	S	D	N	A	N	G	E	A	G	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S				S												T	T						S	S											T	T											S		T	T					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	T	F	D	D	F	I	V	E	A	G	Q	Q	S	A	Q	V	L	I	N	F	F	E	A	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)