PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4kkpA_

Fold library id	PDB Header	Molecule	Title
c4kkpA_	PDB header: structural protein	Chain: A: PDB Molecule: rbma protein;	PDBTitle: crystal structure of vibrio cholerae rbma (crystal form 2)

Links to external resources
Added to library: Sat May 25 08:33:57 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V I E A N L S L N Q N Q L A S N G G Y I S S Q L G I R N E S C E T V K F K Y W L S I K G P E G I Y F P A K A V V G V D T A Q Q E S D A L T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S
G G G
S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G R X L N V T R G F W V P E Y X A D G K Y T V S L Q V V A E N G K V F K A N Q E F V K G V D L N S L P E L N G L T I D I K N Q F G I N S V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
S T T S
S S
T T S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S T G G F V P F T V D L N N G R E G E A N V E F W X T A V G P D G L I I P V N A R E K W V I A S G D T Y S K V R G I N F D K S Y P A G E Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S
G G G
T T
T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence I N A Q V V D I V S G E R V E Q S X T V V K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	I	E	A	N	L	S	L	N	Q	N	Q	L	A	S	N	G	G	Y	I	S	S	Q	L	G	I	R	N	E	S	C	E	T	V	K	F	K	Y	W	L	S	I	K	G	P	E	G	I	Y	F	P	A	K	A	V	V	G	V	D	T	A	Q	Q	E	S	D	A	L	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S						T	T														S	S	S													G	G	G					S				S	S													T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	R	X	L	N	V	T	R	G	F	W	V	P	E	Y	X	A	D	G	K	Y	T	V	S	L	Q	V	V	A	E	N	G	K	V	F	K	A	N	Q	E	F	V	K	G	V	D	L	N	S	L	P	E	L	N	G	L	T	I	D	I	K	N	Q	F	G	I	N	S	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													T	T	S		S												T	T	S												S	S		T	T	S					T	T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	T	G	G	F	V	P	F	T	V	D	L	N	N	G	R	E	G	E	A	N	V	E	F	W	X	T	A	V	G	P	D	G	L	I	I	P	V	N	A	R	E	K	W	V	I	A	S	G	D	T	Y	S	K	V	R	G	I	N	F	D	K	S	Y	P	A	G	E	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T														S	S	S													G	G	G															T	T													T	T	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	I	N	A	Q	V	V	D	I	V	S	G	E	R	V	E	Q	S	X	T	V	V	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T