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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4kf7A_

Fold library idPDB HeaderMoleculeTitle
c4kf7A_PDB header: structural proteinChain: A: PDB Molecule: nup188;PDBTitle: nup188(aa1-1160) from myceliophthora thermophila


Added to library: Sat Jun 22 08:26:37 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MATLTDRSYFPPLGECLSGNKIILSWRLVATALEDLACDRLRSAAVSAFLRDGYVHQLLREPTKTFAPPT
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Known secondary structure (DSSP)

S

STTTS

SSS



TSSS

ST

GGGTT



 .........80.........90.........100.........110.........120.........130.........140
Sequence NETKLDFETKTGAIDPYNLDTIKDDARWLSRNVNINEVAALRVVIIEYQSRAHSHLTGPLSTQDVANVQE
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Known secondary structure (DSSP) TTS





S


TTS


 .........150.........160.........170.........180.........190.........200.........210
Sequence AAGVGDAQASAIVALLNVTTVADADSAWADFESETTRRRRLLATYLSERRSFLAAVDALLAFLLHSRAPG
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Known secondary structure (DSSP)

SST




TSS
TT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TGVELDPLRNAVLQGAFGFDQNAAKPDTTQLDALAPTYIRTLEGCFDRMQMAPESLDNQMLTEQFEVDWI
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Known secondary structure (DSSP) TTS




TTSSS


TT


TTS
TTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence RTALTEAIHAMSLIFQILDLKASQFAAPALVTQWFALMDTCEFFEPVPRGHELIAELLMPLHSLVAAISL
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Known secondary structure (DSSP) GGG
SS


TGGG





S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KLLNVDRTLSYLDQDVDLLEEEEPYLASSDNLAQMHTTIAAAASAGLISTMPVVFAWSLILHQMHVGYQE
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Known secondary structure (DSSP)
TT




TT


GGG
T
GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence RAERRDLLQNQRAQAGFELGSIVSIEASSYDVFLVSQQLERNIEPAENMARIATGRGQVYELMADMAVCL
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Known secondary structure (DSSP) S










SSTTTTT

TTT
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence GSGQLAAFRPVLGARARLTFQDLLKRSAHYVGYQAEPVSCLLSILSGGSQYWDISAEAPSNEKSALDIYT
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Known secondary structure (DSSP) SSSTT

S
TTTS
S
TT

GGG

SS
GGG
SGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence RMLSDDTLNVQYASQSRNRFPYEFLPFASMCRILSAALVSDNESSELITGLLVKNPSLTLNWDPRWDRSY
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Known secondary structure (DSSP)
TTTTBTS

TT
SB



GGGTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELVFEEENTNSFRLTKDIDLFDAAPEEKCTISRGTFGRFVTDVGRVAKLEFEHSTLALFGKRLEVNLMAG
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Known secondary structure (DSSP)


SSS
SSSS
S






TT


SSS



B
STT
 .........710.........720.........730.........740.........750.........760.........770
Sequence AYDTALGYLSADELIEGISLLATVLRAETLRSSKTDPDRGLRILTEASRLLSRGRDIMNVVCDTLDSLVE
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Known secondary structure (DSSP) SSS





SSS

TTSS
STT

 .........780.........790.........800.........810.........820.........830.........840
Sequence EELADLDGPKTAALSSCLQFLHAALPVCPGRVWAYMARCPLINTDTRSGRLSRITANLDMLAERYDLLLS
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Known secondary structure (DSSP) TTS


TTT

TTT

TTTT

T

ST
 .........850.........860.........870.........880.........890.........900.........910
Sequence AVKLFSSLVDSAKTSAVPWIGASDKIVSRVTLSIAQTSVDVFENSATWRFPSEVDRSVMIRDVVGIMHKL
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Known secondary structure (DSSP) T


TT

TTT


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence MLYTHSVLTGPLAPAADYVVESFLSSSSSSLRFQPLLATLLAAFQLPDTTIYQRRAQIVSERLTTVLEFA
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Known secondary structure (DSSP) STT




TT
TTTTTTSSTT



SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TILLRVADYLNKASAGIQTQLFKSACVIARLPAIRHSFRIPAISLLSALVESAGKSSGEPPSLLGYLGPQ
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Known secondary structure (DSSP) TSS

TTGGGT
TTSSS




 .........1060.........1070.........1080.........1090......
Sequence VSRSFIQIAAQLDKPFDRVAEVASTWRFFSTILRNRQQWMANCLLT
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Known secondary structure (DSSP) TTT

TT
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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