PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4kdcA_

Fold library id	PDB Header	Molecule	Title
c4kdcA_	PDB header: transferase	Chain: A: PDB Molecule: 3-demethylubiquinone-9 3-methyltransferase;	PDBTitle: crystal structure of ubig

Links to external resources
Added to library: Sat May 3 09:37:31 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E I A K F E A V A S R W W D L E G E F K P L H R I N P L R L G Y I A E R A G G L F G K K V L D V G C G G G I L A E S M A R E G A T V T G L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T S T T T
T T
T
T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M G F E P L Q V A K L H A L E S G I Q V D Y V Q E T V E E H A A K H A G Q Y D V V T C M E M L E H V P D P Q S V V R A C A Q L V K P G G D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S
S T T
S S G G G S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F F S T L N R N G K S W L M A V V G A E Y I L R M V P K F I K P A E L L G W V D Q T S L K E R H I T G L H Y N P I T N T F K L G P G V D V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
T S S
T T T T S
S S

. . . . . . .

Sequence Y M L H T Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	I	A	K	F	E	A	V	A	S	R	W	W	D	L	E	G	E	F	K	P	L	H	R	I	N	P	L	R	L	G	Y	I	A	E	R	A	G	G	L	F	G	K	K	V	L	D	V	G	C	G	G	G	I	L	A	E	S	M	A	R	E	G	A	T	V	T	G	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	T		T	T	S	T	T																			T			T	T							T		T	T	S									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	G	F	E	P	L	Q	V	A	K	L	H	A	L	E	S	G	I	Q	V	D	Y	V	Q	E	T	V	E	E	H	A	A	K	H	A	G	Q	Y	D	V	V	T	C	M	E	M	L	E	H	V	P	D	P	Q	S	V	V	R	A	C	A	Q	L	V	K	P	G	G	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																T								S									S	T	T									S	S	G	G	G	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	F	S	T	L	N	R	N	G	K	S	W	L	M	A	V	V	G	A	E	Y	I	L	R	M	V	P	K	F	I	K	P	A	E	L	L	G	W	V	D	Q	T	S	L	K	E	R	H	I	T	G	L	H	Y	N	P	I	T	N	T	F	K	L	G	P	G	V	D	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																	T																T	S	S													T	T	T	T						S			S	S
	.	.	.	.	.	.	.
Sequence	Y	M	L	H	T	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)