PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4kd5A_

Fold library id	PDB Header	Molecule	Title
c4kd5A_	PDB header: transport protein	Chain: A: PDB Molecule: abc-type transport system, molybdenum-specific	PDBTitle: substrate binding domain of putative molybdenum abc transporter from2 clostridium difficile

Links to external resources
Added to library: Sat May 11 08:36:33 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V E L N I S A A A S L K E A X A K I E E E Y K K V D S N V K L T V N Y G A S G S L Q Q Q I E Q G A P C D L F I S A G Q K Q X K V L D E E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
T T
T
S
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L V S D T X K D L V K N D L V L I S S A D S S V S G X K D L T T D K V K K I A V G E A E S V P A G K Y A D E V L T N L N L K D K L K D K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S G G G G G T T T
S
T T T
T T
T T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V F A K D V K E V L A W V Q S G N A D V G F V Y F S D T V N N D K I K V V E K T D E K T H S P I T Y P V S V I K A S K N V D A A K K F E E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S G G G S S S T T
S S
G G G S
T T
S

. . . . . . . . . 220 . . . . . . . . .

Sequence L L S E S G Q K I F E E F G Y K K V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S G G G T
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	E	L	N	I	S	A	A	A	S	L	K	E	A	X	A	K	I	E	E	E	Y	K	K	V	D	S	N	V	K	L	T	V	N	Y	G	A	S	G	S	L	Q	Q	Q	I	E	Q	G	A	P	C	D	L	F	I	S	A	G	Q	K	Q	X	K	V	L	D	E	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G													T	T		T	T																				T				S					S	S	S									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	V	S	D	T	X	K	D	L	V	K	N	D	L	V	L	I	S	S	A	D	S	S	V	S	G	X	K	D	L	T	T	D	K	V	K	K	I	A	V	G	E	A	E	S	V	P	A	G	K	Y	A	D	E	V	L	T	N	L	N	L	K	D	K	L	K	D	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T					S	G	G	G	G	G	T	T	T		S							T	T	T														T	T		T	T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	F	A	K	D	V	K	E	V	L	A	W	V	Q	S	G	N	A	D	V	G	F	V	Y	F	S	D	T	V	N	N	D	K	I	K	V	V	E	K	T	D	E	K	T	H	S	P	I	T	Y	P	V	S	V	I	K	A	S	K	N	V	D	A	A	K	K	F	E	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S									G	G	G	S	S	S										T	T		S	S									G	G	G	S											T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	L	L	S	E	S	G	Q	K	I	F	E	E	F	G	Y	K	K	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S								G	G	G	T		B