PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4kbmB_

Fold library id	PDB Header	Molecule	Title
c4kbmB_	PDB header: transferase/transcription	Chain: B: PDB Molecule: rna polymerase-binding transcription factor card;	PDBTitle: structure of the mtb card/rnap beta subunit b1-b2 domains complex

Links to external resources
Added to library: Sat Oct 5 08:24:37 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I F K V G D T V V Y P H H G A A L V E A I E T R E Q K E Y L V L K V A Q G D L T V R V P A E N A E Y V G V R D V V G Q E G L D K V F Q V L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T T T G G G T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A P W S R R Y K A N L E K L A S G D V N K V A E V V R D L W R R D Q E R G L S A G E K R M L A K A R Q I L V G E L A L A E S T D D A K A E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T
S S S

. . . . . . . .

Sequence I L D E V L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	F	K	V	G	D	T	V	V	Y	P	H	H	G	A	A	L	V	E	A	I	E	T	R	E	Q	K	E	Y	L	V	L	K	V	A	Q	G	D	L	T	V	R	V	P	A	E	N	A	E	Y	V	G	V	R	D	V	V	G	Q	E	G	L	D	K	V	F	Q	V	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T						T	T	T																						T	T	T	T							G	G	G	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	P	W	S	R	R	Y	K	A	N	L	E	K	L	A	S	G	D	V	N	K	V	A	E	V	V	R	D	L	W	R	R	D	Q	E	R	G	L	S	A	G	E	K	R	M	L	A	K	A	R	Q	I	L	V	G	E	L	A	L	A	E	S	T	D	D	A	K	A	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T																	T	T	T																									T	T			S	S	S
	.	.	.	.	.	.	.	.
Sequence	I	L	D	E	V	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)