PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4k91A_

Fold library id	PDB Header	Molecule	Title
c4k91A_	PDB header: hydrolase	Chain: A: PDB Molecule: d-ala-d-ala-carboxypeptidase;	PDBTitle: crystal structure of penicillin-binding protein 5 (pbp5) from2 pseudomonas aeruginosa in apo state

Links to external resources
Added to library: Sat Sep 28 08:28:11 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E S M V P A P P Q L A A K S Y V L M D G E S G Q V L V E N N G D Q R L P P A S L T K L M T A Y I A T K E I E A G R I G E N D L V T V S E H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T
S T T
B
G G G T T S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W R T G G S R M F I K V G S Q V S V S D L L H G I I I Q S G N D A S V A L A E H I A G S E D A F A D M M N T T A Q K L G L T N S H F M D A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T
S S T
S S
B
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G L P N P D H Y S S A R D M A V L A R A I I Y G E P S H Y A I Y A Q K E F L W N N I K Q P N R N L L L W R D K T V D G L K T G H T D E A G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B B
T S
G G G G
T T
S
T
T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence C L V A S A V R D G Q R M I A V V F G T N S E Q A R A A E T Q K L L T Y G F R F F E S R N F Y K K G T E L T K G L V W K G S E H E V K A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S S
B S
S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . .

Sequence A E D L T M T L P R G Q M Q K L Q A S M V L E P Q L M A P I Q Q G Q V I G K V E V K L D D K V I R S A D L V A L N A V E E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
G G G
T T
B S
B
T T
S S
S S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	S	M	V	P	A	P	P	Q	L	A	A	K	S	Y	V	L	M	D	G	E	S	G	Q	V	L	V	E	N	N	G	D	Q	R	L	P	P	A	S	L	T	K	L	M	T	A	Y	I	A	T	K	E	I	E	A	G	R	I	G	E	N	D	L	V	T	V	S	E	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S							T	T	T								S	T	T			B			G	G	G															T	T	S	S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	R	T	G	G	S	R	M	F	I	K	V	G	S	Q	V	S	V	S	D	L	L	H	G	I	I	I	Q	S	G	N	D	A	S	V	A	L	A	E	H	I	A	G	S	E	D	A	F	A	D	M	M	N	T	T	A	Q	K	L	G	L	T	N	S	H	F	M	D	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T			S	S						T	T																														S	S																T		S	S		B		S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	L	P	N	P	D	H	Y	S	S	A	R	D	M	A	V	L	A	R	A	I	I	Y	G	E	P	S	H	Y	A	I	Y	A	Q	K	E	F	L	W	N	N	I	K	Q	P	N	R	N	L	L	L	W	R	D	K	T	V	D	G	L	K	T	G	H	T	D	E	A	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		B	B														T	S						G	G	G	G							T	T						S		T						T	T										T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	C	L	V	A	S	A	V	R	D	G	Q	R	M	I	A	V	V	F	G	T	N	S	E	Q	A	R	A	A	E	T	Q	K	L	L	T	Y	G	F	R	F	F	E	S	R	N	F	Y	K	K	G	T	E	L	T	K	G	L	V	W	K	G	S	E	H	E	V	K	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T											S	S																											S	S	S								B	S		S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Sequence	A	E	D	L	T	M	T	L	P	R	G	Q	M	Q	K	L	Q	A	S	M	V	L	E	P	Q	L	M	A	P	I	Q	Q	G	Q	V	I	G	K	V	E	V	K	L	D	D	K	V	I	R	S	A	D	L	V	A	L	N	A	V	E	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								T	T		G	G	G									T	T		B	S		B		T	T											S	S											S	S		B