PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4k8nF_

Fold library id	PDB Header	Molecule	Title
c4k8nF_	PDB header: lipid transport	Chain: F: PDB Molecule: glycolipid transfer protein domain-containing protein 1;	PDBTitle: crystal structure of human ceramide-1-phosphate transfer protein2 (cptp) in complex with 18:1 ceramide-1-phosphate (18:1-c1p)

Links to external resources
Added to library: Sat Jul 20 08:34:16 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L K V V L V S F K Q C L D E K E E V L L D P Y I A S W K G L V R F L N S L G T I F S F I S K D V V S K L R I M E R L R G G P Q S E H Y R S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T S
T T S
B T T
T T S S T T G G G G S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A M V A H E L S N R L V D L E R R S H H P E S G C R T V L R L H R A L H W L Q L F L E G L R T S P E D A R T S A L C A D S Y N A S L A A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S
S
T T
T S
T T S B T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence H P W V V R R A V T V A F C T L P T R E V F L E A M N V G P P E Q A V Q M L G E A L P F I Q R V Y N V S Q K L Y A E H S L L D L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T T T S S
S S T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	K	V	V	L	V	S	F	K	Q	C	L	D	E	K	E	E	V	L	L	D	P	Y	I	A	S	W	K	G	L	V	R	F	L	N	S	L	G	T	I	F	S	F	I	S	K	D	V	V	S	K	L	R	I	M	E	R	L	R	G	G	P	Q	S	E	H	Y	R	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	T	T	T	S		T	T	S			B																	T	T		T	T																				S	S	T	T	G	G	G	G	S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	M	V	A	H	E	L	S	N	R	L	V	D	L	E	R	R	S	H	H	P	E	S	G	C	R	T	V	L	R	L	H	R	A	L	H	W	L	Q	L	F	L	E	G	L	R	T	S	P	E	D	A	R	T	S	A	L	C	A	D	S	Y	N	A	S	L	A	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T					S	S	S		S		T	T																									T	S		T	T	S	B												T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	H	P	W	V	V	R	R	A	V	T	V	A	F	C	T	L	P	T	R	E	V	F	L	E	A	M	N	V	G	P	P	E	Q	A	V	Q	M	L	G	E	A	L	P	F	I	Q	R	V	Y	N	V	S	Q	K	L	Y	A	E	H	S	L	L	D	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S			B					T	T	T	T	S	S		S												S																	T	T		S	S