PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4k73A_

Fold library id	PDB Header	Molecule	Title
c4k73A_	PDB header: transferase	Chain: A: PDB Molecule: l,d-transpeptidase;	PDBTitle: x-ray crystal structure of an l,d-transpeptidase from mycobacterium2 tuberculosis h37rv

Links to external resources
Added to library: Sat Jun 15 08:32:26 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Y G F A V A S V L P T R G Q V V G V A H P V V V T F S A P I T N P A N R H A A E R A V E V K S T P A M T G K F E W L D N D V V Q W V P D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T T
S S
G G G T
S
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F W P A H S T V E L S V G S L S S D F K T G P A V V G V A S I S Q H T F T V S I D G V E E G P P R V H F G E D G V M P A S M G R P E Y P T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T T T T T
S T T
B
B
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V G S Y T V L S K E R S V I M D S S G Y R L S V D Y A V R I T S R G L Y V H S A P W A L P A L G L E N V S H G C I S L S R E D A E W Y Y N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
G G G G G G T T T
B S S S

. . . . . . . . . 220 .

Sequence V D I G D P V I V Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Y	G	F	A	V	A	S	V	L	P	T	R	G	Q	V	V	G	V	A	H	P	V	V	V	T	F	S	A	P	I	T	N	P	A	N	R	H	A	A	E	R	A	V	E	V	K	S	T	P	A	M	T	G	K	F	E	W	L	D	N	D	V	V	Q	W	V	P	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T							S		T	T					T	T								S	S					G	G	G								T						S											T	T							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	W	P	A	H	S	T	V	E	L	S	V	G	S	L	S	S	D	F	K	T	G	P	A	V	V	G	V	A	S	I	S	Q	H	T	F	T	V	S	I	D	G	V	E	E	G	P	P	R	V	H	F	G	E	D	G	V	M	P	A	S	M	G	R	P	E	Y	P	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S								T	T																	T	T	T	T							T	T												S	T	T					B		B		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	G	S	Y	T	V	L	S	K	E	R	S	V	I	M	D	S	S	G	Y	R	L	S	V	D	Y	A	V	R	I	T	S	R	G	L	Y	V	H	S	A	P	W	A	L	P	A	L	G	L	E	N	V	S	H	G	C	I	S	L	S	R	E	D	A	E	W	Y	Y	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S	T	T	S							G	G	G	G	G	G	T	T	T				B	S	S	S
	.	.	.	.	.	.	.	.	.	220	.
Sequence	V	D	I	G	D	P	V	I	V	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T