PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4k51A_

Fold library id	PDB Header	Molecule	Title
c4k51A_	PDB header: biosynthetic protein	Chain: A: PDB Molecule: eukaryotic translation initiation factor 3 subunit a;	PDBTitle: crystal structure of the pci domain of eif3a

Links to external resources
Added to library: Sat Jan 18 08:16:48 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T L A N Y Y E N L V K V F F V S G D P L L H T T A W K K F Y K L Y S T N P R A T E E E F K T Y S S T I F L S A I S T Q L D E I P Y D P H L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M Y R L L N L D A K P T R K E M L Q S I I E D E S I Y G K V D E E L K E L Y D I I E V N F D V D T V K Q Q L E N L L V K L S S K T Y F S Q Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T
T S S
T S
T T T T T
S S S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I A P L R D V I M R R V F V A A S Q K F T T V S Q S E L Y K L A T L P A P L D L S A W D I E K S L L Q A A V E D Y V S I T I D H E S A K V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S G G G
T T S
T T S

. . .

Sequence F A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	L	A	N	Y	Y	E	N	L	V	K	V	F	F	V	S	G	D	P	L	L	H	T	T	A	W	K	K	F	Y	K	L	Y	S	T	N	P	R	A	T	E	E	E	F	K	T	Y	S	S	T	I	F	L	S	A	I	S	T	Q	L	D	E	I	P	Y	D	P	H	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T																			S	S																				T	S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	Y	R	L	L	N	L	D	A	K	P	T	R	K	E	M	L	Q	S	I	I	E	D	E	S	I	Y	G	K	V	D	E	E	L	K	E	L	Y	D	I	I	E	V	N	F	D	V	D	T	V	K	Q	Q	L	E	N	L	L	V	K	L	S	S	K	T	Y	F	S	Q	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	S													T						T	S	S													T	S			T	T	T													T	T		S	S	S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	A	P	L	R	D	V	I	M	R	R	V	F	V	A	A	S	Q	K	F	T	T	V	S	Q	S	E	L	Y	K	L	A	T	L	P	A	P	L	D	L	S	A	W	D	I	E	K	S	L	L	Q	A	A	V	E	D	Y	V	S	I	T	I	D	H	E	S	A	K	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S														S	G	G	G																	T	T	S								T	T	S
	.	.	.
Sequence	F	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)