PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4k3vA_

Fold library id	PDB Header	Molecule	Title
c4k3vA_	PDB header: transport protein	Chain: A: PDB Molecule: abc superfamily atp binding cassette transporter, binding	PDBTitle: structure of staphylococcus aureus mntc

Links to external resources
Added to library: Sat Jul 20 08:42:02 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G K L K V V T T N S I L Y D M A K N V G G D N V D I H S I V P V G Q D P H E Y E V K P K D I K K L T D A D V I L Y N G L N L E T G N G W F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G S S
T T S
S S S
S
T T S S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K A L E Q A G K S L K D K K V I A V S K D V K P I Y L N D K Q D P H A W L S L D N G I K Y V K T I Q Q T F I D N D K K H K A D Y E K Q G N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T T T T T S
B
B
G G G S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y I A Q L E K L N N D S K D K F N D I P K E Q R A M I T S E G A F K Y F S K Q Y G I T P G Y I W E I N T E K Q G T P E Q M R Q A I E F V K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S
G G G
T
S S T T S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence H K L K H L L V E T G E V Y T D S I G K E G T K G D S Y Y K M M K S N I E T V H G S M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S
T T S T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	K	L	K	V	V	T	T	N	S	I	L	Y	D	M	A	K	N	V	G	G	D	N	V	D	I	H	S	I	V	P	V	G	Q	D	P	H	E	Y	E	V	K	P	K	D	I	K	K	L	T	D	A	D	V	I	L	Y	N	G	L	N	L	E	T	G	N	G	W	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S												G	G	G						S	S		T	T	S		S	S	S															S							T	T	S	S		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	A	L	E	Q	A	G	K	S	L	K	D	K	K	V	I	A	V	S	K	D	V	K	P	I	Y	L	N	D	K	Q	D	P	H	A	W	L	S	L	D	N	G	I	K	Y	V	K	T	I	Q	Q	T	F	I	D	N	D	K	K	H	K	A	D	Y	E	K	Q	G	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			T	T	S	T	T				T	T	T	T	S				B					B				G	G	G	S																				G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	I	A	Q	L	E	K	L	N	N	D	S	K	D	K	F	N	D	I	P	K	E	Q	R	A	M	I	T	S	E	G	A	F	K	Y	F	S	K	Q	Y	G	I	T	P	G	Y	I	W	E	I	N	T	E	K	Q	G	T	P	E	Q	M	R	Q	A	I	E	F	V	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	T	T	T	S		G	G	G																		T								S	S	T	T	S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	H	K	L	K	H	L	L	V	E	T	G	E	V	Y	T	D	S	I	G	K	E	G	T	K	G	D	S	Y	Y	K	M	M	K	S	N	I	E	T	V	H	G	S	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S											S	S	S				T	T	S	T	T	S	S