PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4k2jB_

Fold library id	PDB Header	Molecule	Title
c4k2jB_	PDB header: dna binding protein, viral protein	Chain: B: PDB Molecule: kshv (hhv-8) latency-associated nuclear antigen (lana);	PDBTitle: decameric ring structure of kshv (hhv-8) latency-associated nuclear2 antigen (lana) dna binding domain

Links to external resources
Added to library: Sat Nov 9 09:12:00 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R Y Q Q P P V P Y R Q I D D C P A K A R P Q H I F Y R R F L G K D G R R D P K C Q W K F A V I F W G N D P Y G L K K L S Q A F Q F G G V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G S
G G G G G G G S
T T S
S
B S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . .

Sequence G P V S C L P H P G P D Q S P I T Y C V Y V Y C Q N K D T S K K V Q M A R L A W E A S H P L A G N L Q S S I V K F K K P L P L T Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S S
T T S
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	Y	Q	Q	P	P	V	P	Y	R	Q	I	D	D	C	P	A	K	A	R	P	Q	H	I	F	Y	R	R	F	L	G	K	D	G	R	R	D	P	K	C	Q	W	K	F	A	V	I	F	W	G	N	D	P	Y	G	L	K	K	L	S	Q	A	F	Q	F	G	G	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	G	G	G	S		G	G	G												G	G	G	G	S			T	T	S											S													B	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Sequence	G	P	V	S	C	L	P	H	P	G	P	D	Q	S	P	I	T	Y	C	V	Y	V	Y	C	Q	N	K	D	T	S	K	K	V	Q	M	A	R	L	A	W	E	A	S	H	P	L	A	G	N	L	Q	S	S	I	V	K	F	K	K	P	L	P	L	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S	S													S	S																			T	T	S											S	S			S