PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4jzbA_

Fold library id	PDB Header	Molecule	Title
c4jzbA_	PDB header: transferase/transferase inhibitor	Chain: A: PDB Molecule: farnesyl pyrophosphate synthase;	PDBTitle: crystal structure of leshmaniasis major farnesyl diphosphate synthase2 in complex with 1-(2-hydroxy-2,2-diphosphonoethyl)-3-3 phenylpyridinium, ipp and ca2+

Links to external resources
Added to library: Sat Feb 15 08:21:15 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A H M E R F Q K V Y E E V Q E F L L G D A E K R F E M D V H R K G Y L K S M M D T T C L G G K Y N R G L C V V D V A E A M A K D T Q M D A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A M E R V L H D A C V C G W M I E M L Q A H F L V E D D I M D H S K T R R G K P C W Y L H P G V T A Q V A I N D G L I L L A W A T Q M A L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
G G G S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y F A D R P F L A E V L R V F H D V D L T T T I G Q L Y D V T S M V D S A K L D A K V A H A N T T D Y V E Y T P F N H R R I V V Y K T A Y Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T S S S
G G G
T T S
S S
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T Y W L P L V M G L L V S G T L E K V D K K A T H K V A M V M G E Y F Q V Q D D V M D C F T P P E K L G K I G T D I E D A K C S W L A V T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
G G G S
S
T S
T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L T T A P A E K V A E F K A N Y G S T D P A A V A V I K Q L Y T E Q N L L A R F E E Y E K A V V A E V E Q L I A A L E A Q N A A F A A S V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T
T T

. . . . . . . . . 360 .

Sequence V L W S K T Y K R Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	H	M	E	R	F	Q	K	V	Y	E	E	V	Q	E	F	L	L	G	D	A	E	K	R	F	E	M	D	V	H	R	K	G	Y	L	K	S	M	M	D	T	T	C	L	G	G	K	Y	N	R	G	L	C	V	V	D	V	A	E	A	M	A	K	D	T	Q	M	D	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																												S	S	S																			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	M	E	R	V	L	H	D	A	C	V	C	G	W	M	I	E	M	L	Q	A	H	F	L	V	E	D	D	I	M	D	H	S	K	T	R	R	G	K	P	C	W	Y	L	H	P	G	V	T	A	Q	V	A	I	N	D	G	L	I	L	L	A	W	A	T	Q	M	A	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															T	T		S			T	T				G	G	G	S	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	F	A	D	R	P	F	L	A	E	V	L	R	V	F	H	D	V	D	L	T	T	T	I	G	Q	L	Y	D	V	T	S	M	V	D	S	A	K	L	D	A	K	V	A	H	A	N	T	T	D	Y	V	E	Y	T	P	F	N	H	R	R	I	V	V	Y	K	T	A	Y	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T		T	T																								T	S	S	S		G	G	G			T	T	S						S	S		T	T														T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	Y	W	L	P	L	V	M	G	L	L	V	S	G	T	L	E	K	V	D	K	K	A	T	H	K	V	A	M	V	M	G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	K	L	G	K	I	G	T	D	I	E	D	A	K	C	S	W	L	A	V	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T											T	T		G	G	G	S																											S						T	S				T	T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	T	T	A	P	A	E	K	V	A	E	F	K	A	N	Y	G	S	T	D	P	A	A	V	A	V	I	K	Q	L	Y	T	E	Q	N	L	L	A	R	F	E	E	Y	E	K	A	V	V	A	E	V	E	Q	L	I	A	A	L	E	A	Q	N	A	A	F	A	A	S	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S										T	T	T	T																	T	T
	.	.	.	.	.	.	.	.	.	360	.
Sequence	V	L	W	S	K	T	Y	K	R	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T