PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jr8A_

Fold library id	PDB Header	Molecule	Title
c4jr8A_	PDB header: proton transport	Chain: A: PDB Molecule: cruxrhodopsin-3;	PDBTitle: crystal structure of cruxrhodopsin-3 from haloarcula vallismortis at2 2.3 angstrom resolution

Links to external resources
Added to library: Sat Mar 29 08:19:43 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P E G E A I W L W L G T A G M F L G M L Y F I A R G W G E T D S R R Q K F Y I A T I L I T A I A F V N Y L A M A L G F G L T I V E I A G E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R P I Y W A R Y S D W L F T T P L L L Y D L G L L A G A D R N T I S S L V S L D V L M I G T G L V A T L S A G S G V L S A G A E R L V W W G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S T A F L L V L L Y F L F S S L S G R V A D L P S D T R S T F K T L R N L V T V V W L V Y P V W W L V G T E G I G L V G I G I E T A G F M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T S
S T T T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . .

Sequence V I D L V A K V G F G I I L L R S H G V L D G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	E	G	E	A	I	W	L	W	L	G	T	A	G	M	F	L	G	M	L	Y	F	I	A	R	G	W	G	E	T	D	S	R	R	Q	K	F	Y	I	A	T	I	L	I	T	A	I	A	F	V	N	Y	L	A	M	A	L	G	F	G	L	T	I	V	E	I	A	G	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S																							T	T																														T	T	T							T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	P	I	Y	W	A	R	Y	S	D	W	L	F	T	T	P	L	L	L	Y	D	L	G	L	L	A	G	A	D	R	N	T	I	S	S	L	V	S	L	D	V	L	M	I	G	T	G	L	V	A	T	L	S	A	G	S	G	V	L	S	A	G	A	E	R	L	V	W	W	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T																						T																												S		S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	T	A	F	L	L	V	L	L	Y	F	L	F	S	S	L	S	G	R	V	A	D	L	P	S	D	T	R	S	T	F	K	T	L	R	N	L	V	T	V	V	W	L	V	Y	P	V	W	W	L	V	G	T	E	G	I	G	L	V	G	I	G	I	E	T	A	G	F	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	T	T						T	S																													S	T	T	T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence	V	I	D	L	V	A	K	V	G	F	G	I	I	L	L	R	S	H	G	V	L	D	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	S		T	T	T	T	T