PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4jq6A_

Fold library id	PDB Header	Molecule	Title
c4jq6A_	PDB header: proton transport	Chain: A: PDB Molecule: proteorhodopsin;	PDBTitle: crystal structure of blue light-absorbing proteorhodopsin from med122 at 2.3 angstrom

Links to external resources
Added to library: Sat May 11 08:26:15 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Y V G I S F W L A A A I M L A S T V F F F V E R S D V P V K W K T S L T V A G L V T G V A F W H Y L Y M R G V W I Y A G E T P T V F R Y I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D W L I T V P L Q I I E F Y L I I A V F W K L L I A S L V M L I G G F I G E A G L G D V V V W W I V G M I A W L Y I I Y E I F L F N T I K W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . .

Sequence I V T V G W A I Y P I G Y A W G Y F G D G L N E D A L N I V Y N L A D L I N K A A F G L A I W A A A M K D K E T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Y	V	G	I	S	F	W	L	A	A	A	I	M	L	A	S	T	V	F	F	F	V	E	R	S	D	V	P	V	K	W	K	T	S	L	T	V	A	G	L	V	T	G	V	A	F	W	H	Y	L	Y	M	R	G	V	W	I	Y	A	G	E	T	P	T	V	F	R	Y	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T	T	S		G	G	G																														S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	W	L	I	T	V	P	L	Q	I	I	E	F	Y	L	I	I	A	V	F	W	K	L	L	I	A	S	L	V	M	L	I	G	G	F	I	G	E	A	G	L	G	D	V	V	V	W	W	I	V	G	M	I	A	W	L	Y	I	I	Y	E	I	F	L	F	N	T	I	K	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																								T	S	S																									T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Sequence	I	V	T	V	G	W	A	I	Y	P	I	G	Y	A	W	G	Y	F	G	D	G	L	N	E	D	A	L	N	I	V	Y	N	L	A	D	L	I	N	K	A	A	F	G	L	A	I	W	A	A	A	M	K	D	K	E	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S	S	S																																		T