PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jmxA_

Fold library id	PDB Header	Molecule	Title
c4jmxA_	PDB header: transferase/transferase inhibitor	Chain: A: PDB Molecule: probable l,d-transpeptidase ldta;	PDBTitle: structure of ld transpeptidase ldtmt1 in complex with imipenem

Links to external resources
Added to library: Sat Oct 26 08:28:04 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I P G V A S V S P A N G A V V G V A H P V V V T F T T P V T D R R A V E R S I R I S T P H N T T G H F E W V A S N V V R W V P H R Y W P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
S S
S
T T
T T T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H T R V S V G V Q E L T E G F E T G D A L I G V A S I S A H T F T V S R N G E V L R T M P A S L G K P S R P T P I G S F H A M S K E R T V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T T T T T
B
B
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M D S R T I G I P L N S S D G Y L L T A H Y A V R V T W S G V Y V H S A P W S V N S Q G Y A N V S H G C I N L S P D N A A W Y F D A V T V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G T
S S S T T
S T T
G G G T T T T T T
B S S S
T T

. . . . . .

Sequence D P I E V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	P	G	V	A	S	V	S	P	A	N	G	A	V	V	G	V	A	H	P	V	V	V	T	F	T	T	P	V	T	D	R	R	A	V	E	R	S	I	R	I	S	T	P	H	N	T	T	G	H	F	E	W	V	A	S	N	V	V	R	W	V	P	H	R	Y	W	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T	T					T	T								S	S			S														T	T											T	T							T	T				T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	T	R	V	S	V	G	V	Q	E	L	T	E	G	F	E	T	G	D	A	L	I	G	V	A	S	I	S	A	H	T	F	T	V	S	R	N	G	E	V	L	R	T	M	P	A	S	L	G	K	P	S	R	P	T	P	I	G	S	F	H	A	M	S	K	E	R	T	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								T	T																	T	T	T	T							T	T									B		B		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	D	S	R	T	I	G	I	P	L	N	S	S	D	G	Y	L	L	T	A	H	Y	A	V	R	V	T	W	S	G	V	Y	V	H	S	A	P	W	S	V	N	S	Q	G	Y	A	N	V	S	H	G	C	I	N	L	S	P	D	N	A	A	W	Y	F	D	A	V	T	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	T			S	S	S	T	T													S	T	T								G	G	G	T	T	T	T	T	T				B	S	S	S																	T	T
	.	.	.	.	.	.
Sequence	D	P	I	E	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)