PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jmgA_

Fold library id	PDB Header	Molecule	Title
c4jmgA_	PDB header: de novo protein	Chain: A: PDB Molecule: clamp ptpn11_py580;	PDBTitle: crystal structure of the synthetic protein in complex with py peptide

Links to external resources
Added to library: Sat Apr 26 08:44:35 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K F N S L N E L V D Y H R S T S V S R N Q Q I F L R D I G G H P W Y K G K I P R A K A E E M L S K Q R H D G A F L I R E S E S A P G D F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S T T T S
S
S S S
S S B
S S
T
S S T T
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L S V K F G N D V Q H F K V L R D G A G K Y F L W V G G S G G S V S S V P T K L E V V A A T P T S L L I S W D A W S G S D W P V S Y Y R I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
S S
S S S S T T
S S S
S S
T T
T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . .

Sequence Y G E T G G N S P V Q E F T V P G S S Y T A T I S G L S P G V D Y T I T V Y A G Y D G K Y Y Y Q S P I S I N Y R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
T T
B S S S S
B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	F	N	S	L	N	E	L	V	D	Y	H	R	S	T	S	V	S	R	N	Q	Q	I	F	L	R	D	I	G	G	H	P	W	Y	K	G	K	I	P	R	A	K	A	E	E	M	L	S	K	Q	R	H	D	G	A	F	L	I	R	E	S	E	S	A	P	G	D	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	S								T	T	T	S		S		S	S	S											S	S	B		S	S												T		S	S	T	T								S	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	S	V	K	F	G	N	D	V	Q	H	F	K	V	L	R	D	G	A	G	K	Y	F	L	W	V	G	G	S	G	G	S	V	S	S	V	P	T	K	L	E	V	V	A	A	T	P	T	S	L	L	I	S	W	D	A	W	S	G	S	D	W	P	V	S	Y	Y	R	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T											T	T	S				S	S				S	S	S	S	T	T		S	S	S									S	S							T	T				T	T	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Sequence	Y	G	E	T	G	G	N	S	P	V	Q	E	F	T	V	P	G	S	S	Y	T	A	T	I	S	G	L	S	P	G	V	D	Y	T	I	T	V	Y	A	G	Y	D	G	K	Y	Y	Y	Q	S	P	I	S	I	N	Y	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T		S	S									T	T											T	T										B	S	S	S	S		B		S