PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jjpB_

Fold library id	PDB Header	Molecule	Title
c4jjpB_	PDB header: transferase	Chain: B: PDB Molecule: phosphomethylpyrimidine kinase;	PDBTitle: 2.06 angstrom resolution crystal structure of phosphomethylpyrimidine2 kinase (thid)from clostridium difficile 630

Links to external resources
Added to library: Sat Mar 23 08:34:35 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I P T L T I A G S D S S G G A G I Q A D L K T F S A I G T Y G M S V I T A I T A Q N T K G V F A V E D L N K K I I K K Q I E A V F E D I P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S T
T T
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R A V K I G M V S S P E I I L E I V E N L K K Y N P K Y L V V D P V M I Y L L K P E A K E N L I K Y L I P L A Y I I T P N I P E A E E I T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T G G G
S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I K I H N V D D M K R V G E E I L Q L G P K F V L M K G G A V D I L V G K N I F K V Y K S G C T L S S A I T S Y L A L G Y E I T E A V N L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
S
T T
T T

. . . . . . .

Sequence K I Y I T E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	P	T	L	T	I	A	G	S	D	S	S	G	G	A	G	I	Q	A	D	L	K	T	F	S	A	I	G	T	Y	G	M	S	V	I	T	A	I	T	A	Q	N	T	K	G	V	F	A	V	E	D	L	N	K	K	I	I	K	K	Q	I	E	A	V	F	E	D	I	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S	S	S													T															T	T																						T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	A	V	K	I	G	M	V	S	S	P	E	I	I	L	E	I	V	E	N	L	K	K	Y	N	P	K	Y	L	V	V	D	P	V	M	I	Y	L	L	K	P	E	A	K	E	N	L	I	K	Y	L	I	P	L	A	Y	I	I	T	P	N	I	P	E	A	E	E	I	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																										S																							T	T	G	G	G		S					B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	K	I	H	N	V	D	D	M	K	R	V	G	E	E	I	L	Q	L	G	P	K	F	V	L	M	K	G	G	A	V	D	I	L	V	G	K	N	I	F	K	V	Y	K	S	G	C	T	L	S	S	A	I	T	S	Y	L	A	L	G	Y	E	I	T	E	A	V	N	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S													T	T	S		S															T	T																					T	T
	.	.	.	.	.	.	.
Sequence	K	I	Y	I	T	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)