PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jgiB_

Fold library id	PDB Header	Molecule	Title
c4jgiB_	PDB header: protein binding	Chain: B: PDB Molecule: putative uncharacterized protein;	PDBTitle: 1.5 angstrom crystal structure of a novel cobalamin-binding protein2 from desulfitobacterium hafniense dcb-2

Links to external resources
Added to library: Sat Aug 10 08:30:36 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V I D L N A S A Q A M S D L D E G A I N E V V D K V M A K A D A D A A Q E L I K A F Q Q G M T K V G E R F D S G E Y F I G D L I F A G E I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A A M D K L K P A L E K R A K I V L A T V E G D L H D I G K N I F R T M A E A S G F E V F D L G I D V P V K I I V D K V K E V N P E I V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S B T T
T T
S S B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence L S G V L T L A L D S M R E T V D A L K A E G L R N D L K V I I G G V P V N E N V C Q R V G A D D F S T N A A D G V K I C Q R W V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G S S T T
T
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	I	D	L	N	A	S	A	Q	A	M	S	D	L	D	E	G	A	I	N	E	V	V	D	K	V	M	A	K	A	D	A	D	A	A	Q	E	L	I	K	A	F	Q	Q	G	M	T	K	V	G	E	R	F	D	S	G	E	Y	F	I	G	D	L	I	F	A	G	E	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																T		S																							T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	A	M	D	K	L	K	P	A	L	E	K	R	A	K	I	V	L	A	T	V	E	G	D	L	H	D	I	G	K	N	I	F	R	T	M	A	E	A	S	G	F	E	V	F	D	L	G	I	D	V	P	V	K	I	I	V	D	K	V	K	E	V	N	P	E	I	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G				S	S							B	T	T																	T	T								S	S	B															S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	L	S	G	V	L	T	L	A	L	D	S	M	R	E	T	V	D	A	L	K	A	E	G	L	R	N	D	L	K	V	I	I	G	G	V	P	V	N	E	N	V	C	Q	R	V	G	A	D	D	F	S	T	N	A	A	D	G	V	K	I	C	Q	R	W	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S																	T	T		G	G	G	S						S	T	T										T		S				S	S