PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4jeoB_

Fold library id	PDB Header	Molecule	Title
c4jeoB_	PDB header: fluorescent protein	Chain: B: PDB Molecule: red fluorescent protein blfp-r5;	PDBTitle: crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation

Links to external resources
Added to library: Sat Sep 21 08:25:10 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P L P A T H D L H I S G S I N G H E F D L E G S G K G N A K E G Y Q E L H L K S N K G D L S F S P W I L V P N I F Y Q Y L P F P D G A M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T T S S S S
S S
G G G G T T T
G G G
B
G G G
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P Y Q A A M H D G S G Y V M H R S M Q F E D G A M L H S D H R Y I Y K G N H I K G E F R L T G S G F P A D G P V M T N S L T A A D W C V D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S
T T
T T S T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L Y P N D N T I I G K F D W T Y T T T S G K R Y Q S D V Q T N V T F G K P I A A D I L K K Q P M F V F R K V E L K H T K T E L N F K Q W Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
S S
T S
S
S S

. . . . . . .

Sequence K A F Q D I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	L	P	A	T	H	D	L	H	I	S	G	S	I	N	G	H	E	F	D	L	E	G	S	G	K	G	N	A	K	E	G	Y	Q	E	L	H	L	K	S	N	K	G	D	L	S	F	S	P	W	I	L	V	P	N	I	F	Y	Q	Y	L	P	F	P	D	G	A	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S													T	T													T	T	T	T									S	S	S	S		S	S		G	G	G	G	T	T	T			G	G	G		B		G	G	G		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	Y	Q	A	A	M	H	D	G	S	G	Y	V	M	H	R	S	M	Q	F	E	D	G	A	M	L	H	S	D	H	R	Y	I	Y	K	G	N	H	I	K	G	E	F	R	L	T	G	S	G	F	P	A	D	G	P	V	M	T	N	S	L	T	A	A	D	W	C	V	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S												T	T	S													T	T															T	T	S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	Y	P	N	D	N	T	I	I	G	K	F	D	W	T	Y	T	T	T	S	G	K	R	Y	Q	S	D	V	Q	T	N	V	T	F	G	K	P	I	A	A	D	I	L	K	K	Q	P	M	F	V	F	R	K	V	E	L	K	H	T	K	T	E	L	N	F	K	Q	W	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T													T	T	S														S	S								T	S		S													S	S
	.	.	.	.	.	.	.
Sequence	K	A	F	Q	D	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S