PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4je3A_

Fold library id	PDB Header	Molecule	Title
c4je3A_	PDB header: cell cycle	Chain: A: PDB Molecule: central kinetochore subunit iml3;	PDBTitle: an iml3-chl4 heterodimer links the core centromere to factors required2 for accurate chromosome segregation

Links to external resources
Added to library: Sat Oct 19 08:20:49 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A M P Y T W K F L G I S K Q L S L E N G I A K L N Q L L N L E V D L D I Q T I R V P S D P D G G T A A D E Y I R Y E M R L D I S N L D E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T S
S T T S
S S
S S
S S S S S S
S
G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T Y S K F I F L G N S K M E V P M F L C Y C G T D N R N E V V L Q W L K A E Y G V I M W P I K F E Q K T M I K L A D A S I V H V T K E N I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
T T S S S
S
T T
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q I T W F S S K L Y F E P E T Q D K N L R Q F S I E I P R E S C E G L A L G Y G N T M H P Y N D A I V P Y I Y N E T G M A V E R L P L T S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S S
T T
S
S
T S
T T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence I L A G H T K I M R E S I V T S T R S L R N R V L A V V L Q S I Q F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
S S S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	M	P	Y	T	W	K	F	L	G	I	S	K	Q	L	S	L	E	N	G	I	A	K	L	N	Q	L	L	N	L	E	V	D	L	D	I	Q	T	I	R	V	P	S	D	P	D	G	G	T	A	A	D	E	Y	I	R	Y	E	M	R	L	D	I	S	N	L	D	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S										S	S				T	T	S		S							T	T	S											S	S		S	S		S	S	S	S	S	S														S		G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	Y	S	K	F	I	F	L	G	N	S	K	M	E	V	P	M	F	L	C	Y	C	G	T	D	N	R	N	E	V	V	L	Q	W	L	K	A	E	Y	G	V	I	M	W	P	I	K	F	E	Q	K	T	M	I	K	L	A	D	A	S	I	V	H	V	T	K	E	N	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G										T	T	S	S	S								S			T														T																					T					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	I	T	W	F	S	S	K	L	Y	F	E	P	E	T	Q	D	K	N	L	R	Q	F	S	I	E	I	P	R	E	S	C	E	G	L	A	L	G	Y	G	N	T	M	H	P	Y	N	D	A	I	V	P	Y	I	Y	N	E	T	G	M	A	V	E	R	L	P	L	T	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G	S	S																		T	T		S		S						T										S			T	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	I	L	A	G	H	T	K	I	M	R	E	S	I	V	T	S	T	R	S	L	R	N	R	V	L	A	V	V	L	Q	S	I	Q	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T					S	S					S	S	S	S													T