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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4j4vD_

Fold library idPDB HeaderMoleculeTitle
c4j4vD_PDB header: viral proteinChain: D: PDB Molecule: nucleocapsid protein;PDBTitle: pentameric sftsvn with su


Added to library: Sat May 25 08:31:40 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AMSEWSRIAVEFGEQQLNLTELEDFARELAYEGLDPALIIKKLKETGGDDWVKDTKFIIVFALTRGNKIV
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Known secondary structure (DSSP)


TS


S




GGG
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KASGKMSNSGSKRLMALQEKYGLVERAETRLSITPVRVAQSLPTWTCAAAAALKEYLPVGPAVMNLKVEN
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Known secondary structure (DSSP) TSS
T

SS

STT


STGGGSSSSSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YPPEMMCMAFGSLIPTAGVSEATTKTLMEAYSLWQDAFTKTINVKMRGASKTEVYNSFRDPLHAAVNSVF
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Known secondary structure (DSSP)

GGGSSTTGGGG

SSSS

GGGTT

TT
SS
 .........220.........230.........240......
Sequence FPNDVRVKWLKAKGILGPDGVPSRAAEVAAAAYRNL
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Known secondary structure (DSSP) S
TTSB
TTSSB
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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