PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4izhA_

Fold library id	PDB Header	Molecule	Title
c4izhA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: nad/nadp transhydrogenase alpha subunit 1;	PDBTitle: crystal structure of the alpha1 dimer of thermus thermophilus2 transhydrogenase in p6

Links to external resources
Added to library: Sat Feb 1 08:24:06 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V T V A V P K E R A P G E R R V A L V P E V V A R L V K G G A R V R V E R G A G E G A Y H P D E A Y Q E A G A E V V E R G E L L K G A H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S
T
T T T T G G G T
T
T T S T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L F T V Q P P P E D L I Q A L E P G A I V V G F V Q P H K N L E L V R A L Q A K K A T V I A M E L I P R I T R A Q S M D A L S S Q A T V A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T
T
G G G
G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y L A A I H A A R L S P R F F P M L T T A A G T I R P A K V M V M G V G V A G L M A I A T A K R L G A Q V F A Y D V R K A A L E Q A L S L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T
S
S T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A K P I E L P I S A E L T E E E K R I Q H E A L R D H V A G M D V L I T T A Q V P G R R A P I L L T E D M V E R L K P G T V V V D L A A E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T
S
T T S
B
T T S
T T
T T G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G G N C V L T K P G E V V E V R G V R V Y G P L N L P S E L S V H A S E M Y A K N L Y N L S S L L I E K G A F A P K W E D E I V R A A L L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S B T T
B T
T T B
T G G G T T T
T T S

. . . . . . . . . 360 .

Sequence K E G E V L H G P T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	T	V	A	V	P	K	E	R	A	P	G	E	R	R	V	A	L	V	P	E	V	V	A	R	L	V	K	G	G	A	R	V	R	V	E	R	G	A	G	E	G	A	Y	H	P	D	E	A	Y	Q	E	A	G	A	E	V	V	E	R	G	E	L	L	K	G	A	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	T	T					S	S												T							T	T	T	T	G	G	G	T										T						T	T	S	T	T	T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	F	T	V	Q	P	P	P	E	D	L	I	Q	A	L	E	P	G	A	I	V	V	G	F	V	Q	P	H	K	N	L	E	L	V	R	A	L	Q	A	K	K	A	T	V	I	A	M	E	L	I	P	R	I	T	R	A	Q	S	M	D	A	L	S	S	Q	A	T	V	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S								T	T			T	T																							T						G	G	G					G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	L	A	A	I	H	A	A	R	L	S	P	R	F	F	P	M	L	T	T	A	A	G	T	I	R	P	A	K	V	M	V	M	G	V	G	V	A	G	L	M	A	I	A	T	A	K	R	L	G	A	Q	V	F	A	Y	D	V	R	K	A	A	L	E	Q	A	L	S	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		S	S					T	T												S		S													T	T								S											T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	K	P	I	E	L	P	I	S	A	E	L	T	E	E	E	K	R	I	Q	H	E	A	L	R	D	H	V	A	G	M	D	V	L	I	T	T	A	Q	V	P	G	R	R	A	P	I	L	L	T	E	D	M	V	E	R	L	K	P	G	T	V	V	V	D	L	A	A	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S						T	T															T		S									T	T	S						B						T	T	S		T	T						T	T	G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	G	N	C	V	L	T	K	P	G	E	V	V	E	V	R	G	V	R	V	Y	G	P	L	N	L	P	S	E	L	S	V	H	A	S	E	M	Y	A	K	N	L	Y	N	L	S	S	L	L	I	E	K	G	A	F	A	P	K	W	E	D	E	I	V	R	A	A	L	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	B	T	T			B	T						T	T					B								T																G	G	G	T			T	T						T	T	S
	.	.	.	.	.	.	.	.	.	360	.
Sequence	K	E	G	E	V	L	H	G	P	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					T	T	T