PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ixjB_

Fold library id	PDB Header	Molecule	Title
c4ixjB_	PDB header: cell adhesion	Chain: B: PDB Molecule: fimbrial protein (pilin);	PDBTitle: the structure of pilj, a type iv pilin from clostridium difficile

Links to external resources
Added to library: Sat Jan 11 09:11:27 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R N I E K S K A V T C L S N R E N I K T Q I V I A M A E E S S K D K N E V I K E V L E N K D G K Y F E T E P K C K S G G I Y S A T F D D S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T G G G
S
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A K V Y V T C T K H P D G I E M A R D I H Q S M K D L I A S F A Q D P S I I P G A S K G N D D F R K Y L L D N K Y K N G W P T I P D E F K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G S
S S
S T
T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K Y G L S K D T L Y I Q P Y A Y N P T K S D A T V V V F A N N K T G G N W Y T S L V Y D Y D E G R W Y K G K N G I S V A G R S W D V D T D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S T T S T T
S
S S S
T T T T
T T S
S S
S S

. . . . . . . . . 220 . . . . . . . .

Sequence V K S V K T E I H S K E G W G P L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	N	I	E	K	S	K	A	V	T	C	L	S	N	R	E	N	I	K	T	Q	I	V	I	A	M	A	E	E	S	S	K	D	K	N	E	V	I	K	E	V	L	E	N	K	D	G	K	Y	F	E	T	E	P	K	C	K	S	G	G	I	Y	S	A	T	F	D	D	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														T	T	S											T	T	G	G	G		S		S	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	K	V	Y	V	T	C	T	K	H	P	D	G	I	E	M	A	R	D	I	H	Q	S	M	K	D	L	I	A	S	F	A	Q	D	P	S	I	I	P	G	A	S	K	G	N	D	D	F	R	K	Y	L	L	D	N	K	Y	K	N	G	W	P	T	I	P	D	E	F	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S																									G	G	G	S		S	S			S												T		T	T				B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	Y	G	L	S	K	D	T	L	Y	I	Q	P	Y	A	Y	N	P	T	K	S	D	A	T	V	V	V	F	A	N	N	K	T	G	G	N	W	Y	T	S	L	V	Y	D	Y	D	E	G	R	W	Y	K	G	K	N	G	I	S	V	A	G	R	S	W	D	V	D	T	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S	S										S	T	T	S	T	T									S		S	S	S										T	T	T	T												T	T	S		S	S				S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	V	K	S	V	K	T	E	I	H	S	K	E	G	W	G	P	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	T	T