PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4iwmD_

Fold library id	PDB Header	Molecule	Title
c4iwmD_	PDB header: unknown function	Chain: D: PDB Molecule: upf0135 protein mj0927;	PDBTitle: crystal structure of the conserved hypothetical protein mj0927 from2 methanocaldococcus jannaschii (in p21 form)

Links to external resources
Added to library: Sat Feb 1 08:26:22 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X K A K E I I E F I E T F A P K D L A I E G D N I G L Q V G D N L D K E I K K L G I A L D P S L S V I K K A E K E G V D F L F T H H P L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S
G G G S
T T
S
T T
B
S
T T
S S S
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D P I R N F T G V I Y K K L K I L X E N D I I L Y S A H T N L D I C K N G L N D A L A E L Y N L E N P K P L Y D N G L G R V G I F K G S F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T
S T T S T T
S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E F L E I T K K Y I H K N P I V V K S K E V D D N F K L A V L S G Y G L S Q S S I K Y V A E K A D V Y L S G D L T H H S K I L A E E L G L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S
S T T T
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence V V D A T H Y S T E V F G L K K F K E F L S S N L D L E I I S L D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	K	A	K	E	I	I	E	F	I	E	T	F	A	P	K	D	L	A	I	E	G	D	N	I	G	L	Q	V	G	D	N	L	D	K	E	I	K	K	L	G	I	A	L	D	P	S	L	S	V	I	K	K	A	E	K	E	G	V	D	F	L	F	T	H	H	P	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B												S		G	G	G	S		T	T									S		T	T		B								S													T	T		S					S	S		S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	P	I	R	N	F	T	G	V	I	Y	K	K	L	K	I	L	X	E	N	D	I	I	L	Y	S	A	H	T	N	L	D	I	C	K	N	G	L	N	D	A	L	A	E	L	Y	N	L	E	N	P	K	P	L	Y	D	N	G	L	G	R	V	G	I	F	K	G	S	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S																T	T													S	T	T	S									T	T								S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	F	L	E	I	T	K	K	Y	I	H	K	N	P	I	V	V	K	S	K	E	V	D	D	N	F	K	L	A	V	L	S	G	Y	G	L	S	Q	S	S	I	K	Y	V	A	E	K	A	D	V	Y	L	S	G	D	L	T	H	H	S	K	I	L	A	E	E	L	G	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T		S	S						S	S																	S								T	T	T		S																			T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	V	V	D	A	T	H	Y	S	T	E	V	F	G	L	K	K	F	K	E	F	L	S	S	N	L	D	L	E	I	I	S	L	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T		S	S					S