PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ivnB_

Fold library id	PDB Header	Molecule	Title
c4ivnB_	PDB header: transcription regulator	Chain: B: PDB Molecule: transcriptional regulator;	PDBTitle: the vibrio vulnificus nanr protein complexed with mannac-6p

Links to external resources
Added to library: Sat Jul 20 08:52:17 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N L L V R L R S N M E P F S K K L R V V A D Y I L E N A H D V Q F Q T I T D L A R N T Q T S E A T V V R L C R D M G Y K G Y S D F R M A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T
T S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V D L S Q D I C D V S A Q S A V D S L Q D T A K L I D R K S L A R I V E R V H Q A E F I G C I G V G A S S I V G R Y L A Y R L I R I G K K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I M F E D T H L A A M S A S R S S Q G D L W F A V S S S G S T K E V I H A A G L A Y K R D I P V V S L T N I N H S P L S S L S T E M L V A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S S S
T T
S S S
S G G G G G
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 .

Sequence R P E G P L T G G A F A S K V G A L L L V D V L V N S L L E S Y P E Y K D S V Q E T A E V V I P L M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T
T T T T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	L	L	V	R	L	R	S	N	M	E	P	F	S	K	K	L	R	V	V	A	D	Y	I	L	E	N	A	H	D	V	Q	F	Q	T	I	T	D	L	A	R	N	T	Q	T	S	E	A	T	V	V	R	L	C	R	D	M	G	Y	K	G	Y	S	D	F	R	M	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T																				T	T											T	S												T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	L	S	Q	D	I	C	D	V	S	A	Q	S	A	V	D	S	L	Q	D	T	A	K	L	I	D	R	K	S	L	A	R	I	V	E	R	V	H	Q	A	E	F	I	G	C	I	G	V	G	A	S	S	I	V	G	R	Y	L	A	Y	R	L	I	R	I	G	K	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																										S								T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	M	F	E	D	T	H	L	A	A	M	S	A	S	R	S	S	Q	G	D	L	W	F	A	V	S	S	S	G	S	T	K	E	V	I	H	A	A	G	L	A	Y	K	R	D	I	P	V	V	S	L	T	N	I	N	H	S	P	L	S	S	L	S	T	E	M	L	V	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T			T	T								S	S	S															T	T								S	S	S		S	G	G	G	G	G		S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Sequence	R	P	E	G	P	L	T	G	G	A	F	A	S	K	V	G	A	L	L	L	V	D	V	L	V	N	S	L	L	E	S	Y	P	E	Y	K	D	S	V	Q	E	T	A	E	V	V	I	P	L	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				T	T		T	T																								T	T											T	T	G	G	G