PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ioyX_

Fold library id	PDB Header	Molecule	Title
c4ioyX_	PDB header: transcription	Chain: X: PDB Molecule: fact complex subunit spt16;	PDBTitle: structure of the spt16 middle domain reveals functional features of2 the histone chaperone fact

Links to external resources
Added to library: Sat Feb 23 08:24:43 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T K R L D Q I F V R P N P D T K R V P S T V F I H E N G I R F Q S P L R T D S R I D I L F S N I K N L I F Q S C K G E L I V V I H I H L K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
S S G G G
G G G
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I L M G K K K I Q D V Q F Y R E A S E D E L E Q E Q E E R R K R A A L D K E F K Y F A D A I A E A S N G L L T V E N T F R D L G F Q G V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T S
G G G
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N R S A V F C M P T T D C L V Q L I E P P F L V I N L E E V E I C I L E R V Q F G L K N F D M V F V Y K D F N K P V T H I N T V P I E S L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S
S S S S
G G G
S S
S S S T T S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence F L K Q W L T D M D I P Y T V S T I N L N W A T I M K S L Q D D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	K	R	L	D	Q	I	F	V	R	P	N	P	D	T	K	R	V	P	S	T	V	F	I	H	E	N	G	I	R	F	Q	S	P	L	R	T	D	S	R	I	D	I	L	F	S	N	I	K	N	L	I	F	Q	S	C	K	G	E	L	I	V	V	I	H	I	H	L	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S	S											S	S							S	S	G	G	G							G	G	G										T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	L	M	G	K	K	K	I	Q	D	V	Q	F	Y	R	E	A	S	E	D	E	L	E	Q	E	Q	E	E	R	R	K	R	A	A	L	D	K	E	F	K	Y	F	A	D	A	I	A	E	A	S	N	G	L	L	T	V	E	N	T	F	R	D	L	G	F	Q	G	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T																																													T	T	T	S								G	G	G					B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	R	S	A	V	F	C	M	P	T	T	D	C	L	V	Q	L	I	E	P	P	F	L	V	I	N	L	E	E	V	E	I	C	I	L	E	R	V	Q	F	G	L	K	N	F	D	M	V	F	V	Y	K	D	F	N	K	P	V	T	H	I	N	T	V	P	I	E	S	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S								S	S						S	S	S	S						G	G	G											S	S		S									S	S	T	T	S										G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	F	L	K	Q	W	L	T	D	M	D	I	P	Y	T	V	S	T	I	N	L	N	W	A	T	I	M	K	S	L	Q	D	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T							S	S				S