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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ioxB_

Fold library idPDB HeaderMoleculeTitle
c4ioxB_PDB header: viral proteinChain: B: PDB Molecule: tripartite terminase subunit ul15;PDBTitle: the structure of the herpes simplex virus dna-packaging motor pul15 c-2 terminal nuclease domain provides insights into cleavage of3 concatemeric viral genome precursors


Added to library: Sat May 4 08:41:30 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVDPAGTGVAVVGRYRDDYIIFALEHFFLGSAPADIARCV
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STT
GGG


TT



 .........80.........90.........100.........110.........120.........130.........140
Sequence VHSLTQVLALHPGAFRGVRVAVEGNSSQDSAVAIATHVHTEMHRLLSGPELLFYHCEPPGSAVLYPFFLL
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Known secondary structure (DSSP) STTT
SB
SS
T







B

TT

S
BS
B

 .........150.........160.........170.........180.........190.........200.........210
Sequence NKQKTPAFEHFIKKFNSGGVMASQEIVSATVRLQTDPVEYLLEQLNNLTSDDLMVAVIMAIYLAAQAGPP
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Known secondary structure (DSSP) STTTT

SSSSSSS
TT



TS



 ......
Sequence HTFAPI
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Known secondary structure (DSSP)






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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