PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ijsB_

Fold library id	PDB Header	Molecule	Title
c4ijsB_	PDB header: rna binding protein/rna	Chain: B: PDB Molecule: nucleoprotein;	PDBTitle: crystal structure of nucleocapsid protein encoded by the prototypic2 member of orthobunyavirus

Links to external resources
Added to library: Sat Apr 27 08:20:06 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I E L E F H D V A A N T S S T F D P E V A Y A N F K R V H T T G L S Y D H I R I F Y I K G R E I K T S L A K R S E W E V T L N L G G W K I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Y N T N F P G N R N S P V P D D G L T L H R L S G F L A R Y L L E K M L K V S E P E K L I I K S K I I N P L A E K N G I T W N D G E E V Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
S S
S S S
S
T T
T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S F F P G S E M F L G T F R F Y P L A I G I Y K V Q R K E M E P K Y L E K T M R Q R Y M G L E A A T W T V S K L T E V Q S A L T V V S S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S T T G G G G T T T T T T T T S S
G G G G T T G G G S
B T T B
T S

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence G W K K T N V S A A A R D F L A K F G I N M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G T S T T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	E	L	E	F	H	D	V	A	A	N	T	S	S	T	F	D	P	E	V	A	Y	A	N	F	K	R	V	H	T	T	G	L	S	Y	D	H	I	R	I	F	Y	I	K	G	R	E	I	K	T	S	L	A	K	R	S	E	W	E	V	T	L	N	L	G	G	W	K	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																			S	S																							S			S						S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Y	N	T	N	F	P	G	N	R	N	S	P	V	P	D	D	G	L	T	L	H	R	L	S	G	F	L	A	R	Y	L	L	E	K	M	L	K	V	S	E	P	E	K	L	I	I	K	S	K	I	I	N	P	L	A	E	K	N	G	I	T	W	N	D	G	E	E	V	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	T	T		S	S				S	S	S																						S		T	T																	T	T			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	F	F	P	G	S	E	M	F	L	G	T	F	R	F	Y	P	L	A	I	G	I	Y	K	V	Q	R	K	E	M	E	P	K	Y	L	E	K	T	M	R	Q	R	Y	M	G	L	E	A	A	T	W	T	V	S	K	L	T	E	V	Q	S	A	L	T	V	V	S	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	T	T	G	G	G	G	T	T	T	T	T	T												T	T	S	S		G	G	G	G	T	T	G	G	G	S		B	T	T	B									T														S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	G	W	K	K	T	N	V	S	A	A	A	R	D	F	L	A	K	F	G	I	N	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S		G	G	G	T	S	T	T	T	T	T	T