PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ijnB_

Fold library id	PDB Header	Molecule	Title
c4ijnB_	PDB header: transferase	Chain: B: PDB Molecule: acetate kinase;	PDBTitle: crystal structure of an acetate kinase from mycobacterium smegmatis2 bound to amp and sulfate

Links to external resources
Added to library: Tue Jan 22 09:11:48 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V T V L V V N S G S S S L K Y A V V R P A S G E F L A D G I I E E I G S G A V P D H D A A L R A A F D E L A A A G L H L E D L D L K A V G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T
T T S S S
S T T
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R M V H G G K T F Y K P S V V D D E L I A K A R E L S P L A P L H N P P A I K G I E V A R K L L P D L P H I A V F D T A F F H D L P A P A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S
T G G G S T T T
T T S
T T G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T Y A I D R E L A E T W H I K R Y G F H G T S H E Y V S Q Q A A I F L D R P L E S L N Q I V L H L G N G A S A S A V A G G K A V D T S M G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T
S
T T S
G G G
S S S T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T P M E G L V M G T R S G D I D P G V I M Y L W R T A G M S V D D I E S M L N R R S G V L G L G G A S D F R K L R E L I E S G D E H A K L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S S S
S S
S
T S
S
S S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Y D V Y I H R L R K Y I G A Y M A V L G R T D V I S F T A G V G E N V P P V R R D A L A G L G G L G I E I D D A L N S A K S D E P R L I S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
G G G T
B
S
B

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence P D S R V T V L V V P T N E E L A I A R A C V G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	T	V	L	V	V	N	S	G	S	S	S	L	K	Y	A	V	V	R	P	A	S	G	E	F	L	A	D	G	I	I	E	E	I	G	S	G	A	V	P	D	H	D	A	A	L	R	A	A	F	D	E	L	A	A	A	G	L	H	L	E	D	L	D	L	K	A	V	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S									T	T	T	T											T	T	S	S	S			S															T	T			G	G	G	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	M	V	H	G	G	K	T	F	Y	K	P	S	V	V	D	D	E	L	I	A	K	A	R	E	L	S	P	L	A	P	L	H	N	P	P	A	I	K	G	I	E	V	A	R	K	L	L	P	D	L	P	H	I	A	V	F	D	T	A	F	F	H	D	L	P	A	P	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			T	T	T			S															T	G	G	G	S	T	T	T																T	T	S							T	T	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	Y	A	I	D	R	E	L	A	E	T	W	H	I	K	R	Y	G	F	H	G	T	S	H	E	Y	V	S	Q	Q	A	A	I	F	L	D	R	P	L	E	S	L	N	Q	I	V	L	H	L	G	N	G	A	S	A	S	A	V	A	G	G	K	A	V	D	T	S	M	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S									T						S																T	T	S		G	G	G									S	S	S								T	T						S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	P	M	E	G	L	V	M	G	T	R	S	G	D	I	D	P	G	V	I	M	Y	L	W	R	T	A	G	M	S	V	D	D	I	E	S	M	L	N	R	R	S	G	V	L	G	L	G	G	A	S	D	F	R	K	L	R	E	L	I	E	S	G	D	E	H	A	K	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	S	S	S			S	S				S												T	S														S										S	S										T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Y	D	V	Y	I	H	R	L	R	K	Y	I	G	A	Y	M	A	V	L	G	R	T	D	V	I	S	F	T	A	G	V	G	E	N	V	P	P	V	R	R	D	A	L	A	G	L	G	G	L	G	I	E	I	D	D	A	L	N	S	A	K	S	D	E	P	R	L	I	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	S																							T	T		G	G	G	T			B											S					B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	P	D	S	R	V	T	V	L	V	V	P	T	N	E	E	L	A	I	A	R	A	C	V	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S	S																		T	T