PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ijdA_

Fold library id	PDB Header	Molecule	Title
c4ijdA_	PDB header: transferase	Chain: A: PDB Molecule: histone-lysine n-methyltransferase prdm9;	PDBTitle: crystal structure of methyltransferase domain of human pr domain-2 containing protein 9

Links to external resources
Added to library: Sat Feb 16 08:37:52 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E P Q D D D Y L Y C E X C Q N F F I D S C A A H G P P T F V K D S A V D K G H P N R S A L S L P P G L R I G P S G I P Q A G L G V W N E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T T S S S B T T T B
T T
T T T
T T
S S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S D L P L G L H F G P Y E G R I T E D E E A A N N G Y S W L I T K G R N C Y E Y V D G K D K S W A N W X R Y V N C A R D D E E Q N L V A F Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
T T
S
G G G T T S S S T T
S T T T S
G G G G
S S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y H R Q I F Y R T C R V I R P G C E L L V W Y G D E Y G Q E L G I K W G S K W K K E L X P K P E I H P C P S C C L A F S S Q K F L S Q H V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
B
T T
B
T T S T T T S
S S S S
S S

. . . . .

Sequence R N H S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	P	Q	D	D	D	Y	L	Y	C	E	X	C	Q	N	F	F	I	D	S	C	A	A	H	G	P	P	T	F	V	K	D	S	A	V	D	K	G	H	P	N	R	S	A	L	S	L	P	P	G	L	R	I	G	P	S	G	I	P	Q	A	G	L	G	V	W	N	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G					T	T	T	T				S	S	S	B	T	T	T	B												T	T		T	T					T			T	T							S	S	T	T									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	D	L	P	L	G	L	H	F	G	P	Y	E	G	R	I	T	E	D	E	E	A	A	N	N	G	Y	S	W	L	I	T	K	G	R	N	C	Y	E	Y	V	D	G	K	D	K	S	W	A	N	W	X	R	Y	V	N	C	A	R	D	D	E	E	Q	N	L	V	A	F	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		B		T	T								S						G	G	G	T	T	S	S	S								T	T									S	T	T	T	S		G	G	G	G					S	S	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	H	R	Q	I	F	Y	R	T	C	R	V	I	R	P	G	C	E	L	L	V	W	Y	G	D	E	Y	G	Q	E	L	G	I	K	W	G	S	K	W	K	K	E	L	X	P	K	P	E	I	H	P	C	P	S	C	C	L	A	F	S	S	Q	K	F	L	S	Q	H	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T							S	S		B		T	T		B							T	T	S							T	T	T	S																S	S	S	S				S	S
	.	.	.	.	.
Sequence	R	N	H	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T