Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4igcD_

Fold library idPDB HeaderMoleculeTitle
c4igcD_PDB header: transcription, transferaseChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';PDBTitle: x-ray crystal structure of escherichia coli sigma70 holoenzyme


Added to library: Sat Feb 9 15:59:08 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)




SS


S






SSB


S

B
SSS

B
SSSTT
TTTT

SSSS

SSSS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVI
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) GGGSSSB
SSS

B
S
ST



SSSS
TTT

TTTTTTTSS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)


SSSS
SS
B

S
SSS



S

TTSS

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)


GGGG


GGGS

SSS

TTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence PDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGGKRVDYSGRSVITVGPYLRLHQCG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)


TTSS



SS
SS



TGGGS





SS
TT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TSSSSSTT
TTTT


SS

SGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) SSSS
SSTTTTTT

SSS



STSBGGG

B
SSSSSBSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence LGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) T




SSS




B
TTT
SS
SS




SS
S

 .........570.........580.........590.........600.........610.........620.........630
Sequence ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTTS
SSS

SS
SSST
T



GGGS


 .........640.........650.........660.........670.........680.........690.........700
Sequence EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQV
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TTTS
S
TTSS





SS





 .........710.........720.........730.........740.........750.........760.........770
Sequence SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)


TTT
SS

TT
B


B
TTS
B
SS
B
S
TTS


 .........780.........790.........800.........810.........820.........830.........840
Sequence LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TT

B
SS












TTTS





S
SS
BBSS



SSS

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPG
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SS
B

TTTSSGGGTTTTT


B

TTS


SSSB



SSSSS


TT

SGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence TQLTMRDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) GG







ST


SS


B
SS

B

BSSTT
SS
S

B



SS







SSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) S

TT
B

TT
BSS
S


T
ST



T
BB

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
S
SSS
TT


BTTTTTTT
TTSS



B





S
S
 .........1130.........1140.........1150.........1160
Sequence VAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG
Predicted secondary structure



















SS confidence







































Known secondary structure (DSSP) TT




STTT


SSTTSSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D