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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ifdE_

Fold library idPDB HeaderMoleculeTitle
c4ifdE_PDB header: hydrolase/rnaChain: E: PDB Molecule: exosome complex component rrp42;PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna


Added to library: Sat Feb 9 15:41:46 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GHMSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVD
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Known secondary structure (DSSP)

S


SSS


TT


TT




S

TTSS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPI
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Known secondary structure (DSSP) TTT


STTS
TT
T
TTTSS
GGGGB
SSS
SS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SLISFAIYSALNSTYLPKLISAFDDLEVEELPTFHDYDMVKLDINPPLVFILAVVGNNMLLDPAANESEV
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Known secondary structure (DSSP) TT

S
S
TTTT










TTS

 .........220.........230.........240.........250.........260.......
Sequence ANNGLIISWSNGKITSPIRSVALNDSNVKSFKPHLLKQGLAMVEKYAPDVVRSLENL
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Known secondary structure (DSSP)
STT

S
SSS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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