PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4idxA_

Fold library id	PDB Header	Molecule	Title
c4idxA_	PDB header: dna binding protein	Chain: A: PDB Molecule: nucleocapsid protein;	PDBTitle: hexameric crystal structure of schmallenberg virus nucleoprotein

Links to external resources
Added to library: Sat Apr 27 08:22:41 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P Q R N A A T F N P E V G Y V A F I G K Y G Q Q L N F G V A R V F F L N Q K K A K M V L H K T A Q P S V D L T F G G V K F T V V N N H F P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S G G G
S S
T T
B
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y V S N P V P D N A I T L H R M S G Y L A R W I A D T C K A S V L K L A E A S A Q I V M P L A E V K G C T W A D G Y T M Y L G F A P G A E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S S S
B T T
S T T S
T T
G G G T S T T G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F L D A F D F Y P L V I E M H R V L K D N M D V N F M K K V L R Q R Y G T M T A E E W M T Q K I T E I K A A F N S V G Q L A W A K S G F S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G T T T T T S S S
T T T S S
S S S
S S
S S
S S T T T T T T T T
S
S S

. . . . . . . .

Sequence A A R T F L Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	Q	R	N	A	A	T	F	N	P	E	V	G	Y	V	A	F	I	G	K	Y	G	Q	Q	L	N	F	G	V	A	R	V	F	F	L	N	Q	K	K	A	K	M	V	L	H	K	T	A	Q	P	S	V	D	L	T	F	G	G	V	K	F	T	V	V	N	N	H	F	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		S	S			S												G	G	G																										S	S						T	T						B			S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	V	S	N	P	V	P	D	N	A	I	T	L	H	R	M	S	G	Y	L	A	R	W	I	A	D	T	C	K	A	S	V	L	K	L	A	E	A	S	A	Q	I	V	M	P	L	A	E	V	K	G	C	T	W	A	D	G	Y	T	M	Y	L	G	F	A	P	G	A	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S	S				S	S	S		B																	T	T		S	T	T							S								T	T				G	G	G								T	S	T	T	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	L	D	A	F	D	F	Y	P	L	V	I	E	M	H	R	V	L	K	D	N	M	D	V	N	F	M	K	K	V	L	R	Q	R	Y	G	T	M	T	A	E	E	W	M	T	Q	K	I	T	E	I	K	A	A	F	N	S	V	G	Q	L	A	W	A	K	S	G	F	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G	T	T									T	T	T	S	S	S			T					T	T	S	S			S	S	S		S	S		S	S		S	S	T	T	T	T	T	T	T	T							S							S	S
	.	.	.	.	.	.	.	.
Sequence	A	A	R	T	F	L	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		S