PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ib2B_

Fold library id	PDB Header	Molecule	Title
c4ib2B_	PDB header: transport protein	Chain: B: PDB Molecule: putative lipoprotein;	PDBTitle: crystal structure of a putative lipoprotein (rumgna_00858) from2 ruminococcus gnavus atcc 29149 at 1.76 a resolution

Links to external resources
Added to library: Tue Jan 22 09:04:01 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A K T I K V A A S A T P H A E I L E Q A K S I L K K E G Y Q L E V T V F D D Y V Q P N E V V E S G E F D A N Y F Q H V P Y L E S F N E E K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S S S S T T S S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T H L V D A G D I H Y E P F G I Y P G T K K S L D E I S E G D K I A V P N D T T N E A R A L L L L Q D N G I I T L K D G A G L N A T V N D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
G G G
T T
S T T S
T T
G G G
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E N P Y N V E I V E L E A A Q V A R V T G E T A Y V V L N G N Y A L E A G Y S V A K D A L A Y E K S D S E A A K T Y V N I I A V K E G N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G G G G G T T T S S
T T
S
T T S T
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence K E E K I Q A L V K A L K S D E I K E Y I E K T Y D G A V I P F E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S S T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	K	T	I	K	V	A	A	S	A	T	P	H	A	E	I	L	E	Q	A	K	S	I	L	K	K	E	G	Y	Q	L	E	V	T	V	F	D	D	Y	V	Q	P	N	E	V	V	E	S	G	E	F	D	A	N	Y	F	Q	H	V	P	Y	L	E	S	F	N	E	E	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T															T	T									S	S	S	S								T	T	S	S	S																		T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	H	L	V	D	A	G	D	I	H	Y	E	P	F	G	I	Y	P	G	T	K	K	S	L	D	E	I	S	E	G	D	K	I	A	V	P	N	D	T	T	N	E	A	R	A	L	L	L	L	Q	D	N	G	I	I	T	L	K	D	G	A	G	L	N	A	T	V	N	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S		S		G	G	G			T	T								S														T	T	S					T	T		G	G	G			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	N	P	Y	N	V	E	I	V	E	L	E	A	A	Q	V	A	R	V	T	G	E	T	A	Y	V	V	L	N	G	N	Y	A	L	E	A	G	Y	S	V	A	K	D	A	L	A	Y	E	K	S	D	S	E	A	A	K	T	Y	V	N	I	I	A	V	K	E	G	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T									G	G	G	G	G	G	G	T	T	T	S	S												T	T								S					T	T	S						T								T	T		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	K	E	E	K	I	Q	A	L	V	K	A	L	K	S	D	E	I	K	E	Y	I	E	K	T	Y	D	G	A	V	I	P	F	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T												T	S											S	T	T	S	S