PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4iarA_

Fold library id	PDB Header	Molecule	Title
c4iarA_	PDB header: signaling protein, electron transport	Chain: A: PDB Molecule: chimera protein of human 5-hydroxytryptamine receptor 1b	PDBTitle: crystal structure of the chimeric protein of 5-ht1b-bril in complex2 with ergotamine (psi community target, e. xu)

Links to external resources
Added to library: Sat Mar 16 09:43:45 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y I Y Q D S I S L P W K V L L V M L L A L I T L A T T L S N A F V I A T V Y R T R K L H T P A N Y L I A S L A V T D L L V S I L V M P I S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S
G G G
S T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M Y T V T G R W T L G Q V V C D F W L S S D I T C C T A S I W H L C V I A L D R Y W A I T D A V E Y S A K R T P K R A A V M I A L V W V F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S I S L P P F F W R Q A S E C V V N T D H I L Y T V Y S T V G A F Y F P T L L L I A L Y G R I Y V E A R S R I A D L E D N W E T L N D N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K V I E K A D N A A Q V K D A L T K M R A A A L D A Q K A T P P K L E D K S P D S P E M K D F R H G F D I L V G Q I D D A L K L A N E G K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S S
T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K E A Q A A A E Q L K T T R N A Y I Q K Y L A A R E R K A T K T L G I I L G A F I V C W L P F F I I S L V M P I W F H L A I F D F F T W L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T
T T
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . .

Sequence Y L N S L I N P I I Y T M S N E D F K Q A F H K L I R F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	I	Y	Q	D	S	I	S	L	P	W	K	V	L	L	V	M	L	L	A	L	I	T	L	A	T	T	L	S	N	A	F	V	I	A	T	V	Y	R	T	R	K	L	H	T	P	A	N	Y	L	I	A	S	L	A	V	T	D	L	L	V	S	I	L	V	M	P	I	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	S																																		G	G	G		S																				T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	Y	T	V	T	G	R	W	T	L	G	Q	V	V	C	D	F	W	L	S	S	D	I	T	C	C	T	A	S	I	W	H	L	C	V	I	A	L	D	R	Y	W	A	I	T	D	A	V	E	Y	S	A	K	R	T	P	K	R	A	A	V	M	I	A	L	V	W	V	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S																																				S						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	I	S	L	P	P	F	F	W	R	Q	A	S	E	C	V	V	N	T	D	H	I	L	Y	T	V	Y	S	T	V	G	A	F	Y	F	P	T	L	L	L	I	A	L	Y	G	R	I	Y	V	E	A	R	S	R	I	A	D	L	E	D	N	W	E	T	L	N	D	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S					T	T									S													T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	V	I	E	K	A	D	N	A	A	Q	V	K	D	A	L	T	K	M	R	A	A	A	L	D	A	Q	K	A	T	P	P	K	L	E	D	K	S	P	D	S	P	E	M	K	D	F	R	H	G	F	D	I	L	V	G	Q	I	D	D	A	L	K	L	A	N	E	G	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S																						S				S	S				S	S	S			T	T																							T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	E	A	Q	A	A	A	E	Q	L	K	T	T	R	N	A	Y	I	Q	K	Y	L	A	A	R	E	R	K	A	T	K	T	L	G	I	I	L	G	A	F	I	V	C	W	L	P	F	F	I	I	S	L	V	M	P	I	W	F	H	L	A	I	F	D	F	F	T	W	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T											S								T	T																												T	T					T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence	Y	L	N	S	L	I	N	P	I	I	Y	T	M	S	N	E	D	F	K	Q	A	F	H	K	L	I	R	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T