Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4i99A_

Fold library idPDB HeaderMoleculeTitle
c4i99A_PDB header: dna binding proteinChain: A: PDB Molecule: chromosome partition protein smc;PDBTitle: crystal structure of the smchead bound to the c-winged helix domain of2 scpa


Added to library: Mon Feb 4 12:36:32 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRISDLIFAGS
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
SBGGG
SS


SS

TTSSTT


TGGGT
SSGGGGB



 .........80.........90.........100.........110.........120.........130.........140
Sequence KNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAXISPDGYN
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SS



S

TT

SSSSSS
TTS
TT
TT

TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IVLQGDITKFIKXSPLERRLLIDDISGIKEKKNVFXRTFEAISRNFSEIFAKLSPGGSARLILENPEDPF
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
TTS

T


STT
SSTTSGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence SGGLEIEAKPAGKDVKRIEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) GS
SSSSS


GGGS
S

SSTTTT

 .........290.........300.........310.........320...
Sequence SKESQFIVITLRDVXXANADKIIGVSXRDGVSKVVSLSLEKAX
Predicted secondary structure





SS confidence










































Known secondary structure (DSSP) TTS


TT
S
SSS

TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D