PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4i62A_

Fold library id	PDB Header	Molecule	Title
c4i62A_	PDB header: transport protein	Chain: A: PDB Molecule: amino acid abc transporter, periplasmic amino acid-binding	PDBTitle: 1.05 angstrom crystal structure of an amino acid abc transporter2 substrate-binding protein from streptococcus pneumoniae canada3 mdr_19a bound to l-arginine

Links to external resources
Added to library: Wed Jan 9 18:45:10 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I E A I K S K G K L V V A L N P D F A P F E Y Q K V V D G K N Q I V G S D I E L A K A I A T E L G V E L E L S P M S F D N V L A S V Q S G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
B T T T B T T S T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D L A I S G V S K T D E R S K V F D F S T P Y Y T A K N K L I V K K S D L A T Y Q S V N D L A Q K K V G A Q K G S I Q E T M A K D L L Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
B
T T
S
G G G T T T
S S G G G G T T
T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S S L V S L P K N G N L I T D L K S G Q V D A V I F E E P V A K G F V E N N P D L A I A D L N F E K Q D D S Y A V A M K K D S K E L K E A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S S S
T T
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence D K T I Q K L K E S G E L D K L I E D A F K A S I E K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	E	A	I	K	S	K	G	K	L	V	V	A	L	N	P	D	F	A	P	F	E	Y	Q	K	V	V	D	G	K	N	Q	I	V	G	S	D	I	E	L	A	K	A	I	A	T	E	L	G	V	E	L	E	L	S	P	M	S	F	D	N	V	L	A	S	V	Q	S	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T								S		B	T	T	T	B						T	T						S														T																			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	L	A	I	S	G	V	S	K	T	D	E	R	S	K	V	F	D	F	S	T	P	Y	Y	T	A	K	N	K	L	I	V	K	K	S	D	L	A	T	Y	Q	S	V	N	D	L	A	Q	K	K	V	G	A	Q	K	G	S	I	Q	E	T	M	A	K	D	L	L	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S				S	S		B							T	T					S													G	G	G	T	T	T		S	S	G	G	G	G	T	T							T	T	S											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	S	L	V	S	L	P	K	N	G	N	L	I	T	D	L	K	S	G	Q	V	D	A	V	I	F	E	E	P	V	A	K	G	F	V	E	N	N	P	D	L	A	I	A	D	L	N	F	E	K	Q	D	D	S	Y	A	V	A	M	K	K	D	S	K	E	L	K	E	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S											T	T	S	S	S																	T	T					S																S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	D	K	T	I	Q	K	L	K	E	S	G	E	L	D	K	L	I	E	D	A	F	K	A	S	I	E	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T													T	S