PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4i4zE_

Fold library id	PDB Header	Molecule	Title
c4i4zE_	PDB header: lyase	Chain: E: PDB Molecule: naphthoate synthase;	PDBTitle: synechocystis sp. pcc 6803 1,4-dihydroxy-2-naphthoyl-coenzyme a2 synthase (menb) in complex with salicylyl-coa

Links to external resources
Added to library: Sat May 11 08:52:07 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D W H I A K H Y D D I L Y Y K A G G I A K I V I N R P H K R N A F R P Q T V F E L Y D A F C N A R E D N R I G V V L L T G A G P H S D G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
G G G T T
B
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y A F C S G G D Q S V R G E G G Y I D D Q G T P R L N V L D L Q R L I R S M P K V V I A L V A G Y A I G G G H V L H L V C D L T I A A D N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G T T
T T S
T S S S
S T S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I F G Q T G P K V G S F D G G F G S S Y L A R I V G Q K K A R E I W Y L C R Q Y S A Q E A E R M G M V N T V V P V D R L E E E G I Q W A K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T T
T S
S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . .

Sequence I L S K S P L A I R C L K A A F N A D C D G Q A G L Q E L A G N A T L L Y Y M T E E G S E G K Q A F L E K R P P D F S Q Y P W L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S T T S T T S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	W	H	I	A	K	H	Y	D	D	I	L	Y	Y	K	A	G	G	I	A	K	I	V	I	N	R	P	H	K	R	N	A	F	R	P	Q	T	V	F	E	L	Y	D	A	F	C	N	A	R	E	D	N	R	I	G	V	V	L	L	T	G	A	G	P	H	S	D	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S							T	T									G	G	G	T	T		B																			T	T													T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	A	F	C	S	G	G	D	Q	S	V	R	G	E	G	G	Y	I	D	D	Q	G	T	P	R	L	N	V	L	D	L	Q	R	L	I	R	S	M	P	K	V	V	I	A	L	V	A	G	Y	A	I	G	G	G	H	V	L	H	L	V	C	D	L	T	I	A	A	D	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							B		G	G	G			T	T					T	T	S					T											S	S	S								S				T									S	S						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	F	G	Q	T	G	P	K	V	G	S	F	D	G	G	F	G	S	S	Y	L	A	R	I	V	G	Q	K	K	A	R	E	I	W	Y	L	C	R	Q	Y	S	A	Q	E	A	E	R	M	G	M	V	N	T	V	V	P	V	D	R	L	E	E	E	G	I	Q	W	A	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T					S	T	T	T																															T	S		S					G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Sequence	I	L	S	K	S	P	L	A	I	R	C	L	K	A	A	F	N	A	D	C	D	G	Q	A	G	L	Q	E	L	A	G	N	A	T	L	L	Y	Y	M	T	E	E	G	S	E	G	K	Q	A	F	L	E	K	R	P	P	D	F	S	Q	Y	P	W	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S															T	T	S																	T	T	S												T	T	S					T	T	S