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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4i3hA_

Fold library idPDB HeaderMoleculeTitle
c4i3hA_PDB header: isomerase/dnaChain: A: PDB Molecule: topoisomerase iv subunit b, dna topoisomerase 4 subunit aPDBTitle: a three-gate structure of topoisomerase iv from streptococcus2 pneumoniae


Added to library: Sat Aug 31 08:41:48 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSDRIDVTINKDGSLTVQDHTVEVIFTILHAGGKFLH
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Known secondary structure (DSSP)

SSST


SSTT


SSS












 .........80.........90.........100.........110.........120.........130.........140
Sequence GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKY
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Known secondary structure (DSSP)

TT
TTTTTTSS


STT


TTT
S




 .........150.........160.........170.........180.........190.........200.........210
Sequence NTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGEDNGFQVEVA
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Known secondary structure (DSSP)
TT
TTTT

TTSTTS
BSS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKEGSDYREGLAAVLSILVPE
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Known secondary structure (DSSP) BS
SS
TT
TT
BTTS






GGGGTT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence EHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARGKLTPAQS
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Known secondary structure (DSSP) SS

BSSSSTTSB

TT
ST




B

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADF
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Known secondary structure (DSSP)

TTT
S
TTT
SS


TTTS
T
TS
SSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGAYAWDGELEELRL
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Known secondary structure (DSSP)
TTS
S
S


SSS
TT



S







TTTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence QRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLENIQNM
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Known secondary structure (DSSP)


SSGGGS
TT
TTT


SSSS



S


 .........570.........580.........590.........600.........610.........620.........630
Sequence SLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHG
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Known secondary structure (DSSP) TTTS
BTTT


TT

TTS

T

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence DSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDD
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Known secondary structure (DSSP) TT
TTT
SS
SS



TT





TTT

STTGGGS
S

SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence TEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA
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Known secondary structure (DSSP) S
SS


SS
T



SS







TT

TTT

S


TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence IIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEV
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Known secondary structure (DSSP)
S

SSS


TT

TTTSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence RDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVI
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Known secondary structure (DSSP)

BTTB


SS

STT
SSSS

 .........920.........930.........940.........950.........960.........970.........980
Sequence LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRL
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Known secondary structure (DSSP) TTSSST


T

GGGG
 .........990.........1000.........1010.........1020.........1030.......
Sequence TNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLED
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Known secondary structure (DSSP) G








S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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