PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4hyjB_

Fold library id	PDB Header	Molecule	Title
c4hyjB_	PDB header: proton transport	Chain: B: PDB Molecule: rhodopsin;	PDBTitle: crystal structure of exiguobacterium sibiricum rhodopsin

Links to external resources
Added to library: Sat Jul 20 08:42:33 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L V L A T Q Y M F W V G F V G M A A G T L Y F L V E R N S L A P E Y R S T A T V A A L V T F V A A I H Y Y F M K D F P T E I R Y I D W L V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G T
-

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T P L L L V K F P L L L G L K G R L G R P L L T K L V I A D V I M I V G G Y I G E S S I N I A G G F T Q L G L W S Y L I G C F A W I Y I I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T B T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L F T N V T K A A E N K P A P I R D A L L K M R L F I L I G W A I Y P I G Y A V T L F A P G V E I Q L V R E L I Y N F A D L T N K V G F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G S
T T T T S
S

. . . . . . . . . 220 . . . .

Sequence L I A F F A V K T M S S L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	V	L	A	T	Q	Y	M	F	W	V	G	F	V	G	M	A	A	G	T	L	Y	F	L	V	E	R	N	S	L	A	P	E	Y	R	S	T	A	T	V	A	A	L	V	T	F	V	A	A	I	H	Y	Y	F	M	K	D	F	P	T	E	I	R	Y	I	D	W	L	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T	S		G	G	G																						T		-
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	P	L	L	L	V	K	F	P	L	L	L	G	L	K	G	R	L	G	R	P	L	L	T	K	L	V	I	A	D	V	I	M	I	V	G	G	Y	I	G	E	S	S	I	N	I	A	G	G	F	T	Q	L	G	L	W	S	Y	L	I	G	C	F	A	W	I	Y	I	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															B	T	T	B	T																													T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	F	T	N	V	T	K	A	A	E	N	K	P	A	P	I	R	D	A	L	L	K	M	R	L	F	I	L	I	G	W	A	I	Y	P	I	G	Y	A	V	T	L	F	A	P	G	V	E	I	Q	L	V	R	E	L	I	Y	N	F	A	D	L	T	N	K	V	G	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T						G	G	G	S																	T	T	T	T												S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	L	I	A	F	F	A	V	K	T	M	S	S	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)