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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4hwvA_

Fold library idPDB HeaderMoleculeTitle
c4hwvA_PDB header: lyaseChain: A: PDB Molecule: pectate lyase/amb allergen;PDBTitle: structure of pectate lyase from acidovorax avenae subsp citrulli


Added to library: Sat Oct 26 08:29:23 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSV
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Known secondary structure (DSSP)



TTS
GGG
B
TT


S



GGGGSSS


TTTT

GGG
STTT


TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTV
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Known secondary structure (DSSP) S



S

SSSB
TT

B

TSTT



S
SSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence SGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFP
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Known secondary structure (DSSP)
S
SS
TT

S

BTTB
S




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGL
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Known secondary structure (DSSP) TTTTTT




SSSS

TT

GGGS





TTTTSGGG






S
 .........290.........300.........310.........320.........330.........340.........350
Sequence VDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYN
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Known secondary structure (DSSP)
TT
S



S
SS
BTTTB
TTS

S

TTSSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASEC
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Known secondary structure (DSSP)


TTSSS



S
TT
S

SSS


GGGT


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence ASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPR
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Known secondary structure (DSSP)

S
TT


TT
B




GGGTS





STT
STTSSB





 ........
Sequence KLAAALEH
Predicted secondary structure

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Known secondary structure (DSSP)

GGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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