PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4htoA_

Fold library id	PDB Header	Molecule	Title
c4htoA_	PDB header: ligase, dna binding protein	Chain: A: PDB Molecule: dna ligase 4;	PDBTitle: crystal structure of the dbd domain of human dna ligase iv apo form

Links to external resources
Added to library: Thu Jan 10 11:02:06 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Q T V A S H V P F A D L C S T L E R I Q K S K G R A E K I R H F R E F L D S W R K F H D A L H K N H K D V T D S F Y P A M R L I L P Q L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S T T T S B S
S T T
B
S G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R E R M A Y G I K E T M L A K L Y I E L L N L P R D G K D A L K L L N Y R G D F A M I A Y F V L K P R C L Q K G S L T I Q Q V N D L L D S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T S
T T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A S N N S A K R K D L I K K S L L Q L I T Q S S A L E Q K W L I R M I I K D L K L G V S Q Q T I F S V F H N D A A E L H N V T T D L E K V C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T S
T
S S
S
S S

. . . .

Sequence R Q L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Q	T	V	A	S	H	V	P	F	A	D	L	C	S	T	L	E	R	I	Q	K	S	K	G	R	A	E	K	I	R	H	F	R	E	F	L	D	S	W	R	K	F	H	D	A	L	H	K	N	H	K	D	V	T	D	S	F	Y	P	A	M	R	L	I	L	P	Q	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	T	T	T	S	B														S		S																									T	T				B											S	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	E	R	M	A	Y	G	I	K	E	T	M	L	A	K	L	Y	I	E	L	L	N	L	P	R	D	G	K	D	A	L	K	L	L	N	Y	R	G	D	F	A	M	I	A	Y	F	V	L	K	P	R	C	L	Q	K	G	S	L	T	I	Q	Q	V	N	D	L	L	D	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																		T	T			T	T	S																						T	T	T								B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	S	N	N	S	A	K	R	K	D	L	I	K	K	S	L	L	Q	L	I	T	Q	S	S	A	L	E	Q	K	W	L	I	R	M	I	I	K	D	L	K	L	G	V	S	Q	Q	T	I	F	S	V	F	H	N	D	A	A	E	L	H	N	V	T	T	D	L	E	K	V	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T															T	S														T					S	S																	S			S	S
	.	.	.	.
Sequence	R	Q	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T