PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4houB_

Fold library id	PDB Header	Molecule	Title
c4houB_	PDB header: rna binding protein	Chain: B: PDB Molecule: interferon-induced protein with tetratricopeptide repeats	PDBTitle: crystal structure of n-terminal human ifit1

Links to external resources
Added to library: Mon Feb 4 12:46:05 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q V K D S L E Q L R C H F T W E L S I L D T K Y S V G I H N L L A Y V K H L K G Q N E E A L K S L K E A E N L X Q N V R S L V T W G N F A W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S G G G T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence X Y Y H X G R L A E A Q T Y L D K V E N I C K K L S N P F R Y R X E C P E I D C E E G W A L L K C G G K N Y E R A K A C F E K V L E V D P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
S
S S
G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N P E S S A G Y A I S A Y R L D G F K L N H K P F S L L P L R Q A V R L N P D N G Y I K V L L A L K L Q D E G Q E A E G E K Y I E E A L A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T
T T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence X S S Q T Y V F R Y A A K F Y R R K G S V D K A L E L L K K A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	V	K	D	S	L	E	Q	L	R	C	H	F	T	W	E	L	S	I	L	D	T	K	Y	S	V	G	I	H	N	L	L	A	Y	V	K	H	L	K	G	Q	N	E	E	A	L	K	S	L	K	E	A	E	N	L	X	Q	N	V	R	S	L	V	T	W	G	N	F	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S		S	G	G	G	T	T																							T	T																			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	X	Y	Y	H	X	G	R	L	A	E	A	Q	T	Y	L	D	K	V	E	N	I	C	K	K	L	S	N	P	F	R	Y	R	X	E	C	P	E	I	D	C	E	E	G	W	A	L	L	K	C	G	G	K	N	Y	E	R	A	K	A	C	F	E	K	V	L	E	V	D	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T																			T			S		S	S																				G	G	G																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	P	E	S	S	A	G	Y	A	I	S	A	Y	R	L	D	G	F	K	L	N	H	K	P	F	S	L	L	P	L	R	Q	A	V	R	L	N	P	D	N	G	Y	I	K	V	L	L	A	L	K	L	Q	D	E	G	Q	E	A	E	G	E	K	Y	I	E	E	A	L	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T						T	T	T	T											T	T															T	T															S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	X	S	S	Q	T	Y	V	F	R	Y	A	A	K	F	Y	R	R	K	G	S	V	D	K	A	L	E	L	L	K	K	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		T	T												T