PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4hicA_

Fold library id	PDB Header	Molecule	Title
c4hicA_	PDB header: unknown function	Chain: A: PDB Molecule: trak;	PDBTitle: crystal structure of the potential transfer protein trak from gram-2 positive conjugative plasmid pip501

Links to external resources
Added to library: Sat Jan 25 08:12:43 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S D H L L K L S A K E R A D E A T E A F E S W Y K S F S N G D V I L E I N K E L L K E G S G G T S P I E L Q T K L I D N L K A K F G D K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T S S
T T
G G G G S S S S S
G G G B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S D D F Y T S L Q A S F N F N P V I V D G T K G L T I S K Q N D D E S Q W F S T W F L D T E K K E K N T K I I V R N D F P F E W V D W R N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
T T T
S
T T T T S
S S S B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . .

Sequence G Q H D E K V G K I F K N V D W D N D L S Y E V I G I D F T E A T K N I E T N Q I L F V Q M H Y N E K I G K W Q V T G N V G G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T T S
S
S S S
S
T T
S S
S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	D	H	L	L	K	L	S	A	K	E	R	A	D	E	A	T	E	A	F	E	S	W	Y	K	S	F	S	N	G	D	V	I	L	E	I	N	K	E	L	L	K	E	G	S	G	G	T	S	P	I	E	L	Q	T	K	L	I	D	N	L	K	A	K	F	G	D	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					S																		T	S	S		T	T								G	G	G	G	S	S	S	S	S																				G	G	G	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	D	D	F	Y	T	S	L	Q	A	S	F	N	F	N	P	V	I	V	D	G	T	K	G	L	T	I	S	K	Q	N	D	D	E	S	Q	W	F	S	T	W	F	L	D	T	E	K	K	E	K	N	T	K	I	I	V	R	N	D	F	P	F	E	W	V	D	W	R	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	T	T	S						T	T	T									S							T	T	T	T				S		S	S	S	B									S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence	G	Q	H	D	E	K	V	G	K	I	F	K	N	V	D	W	D	N	D	L	S	Y	E	V	I	G	I	D	F	T	E	A	T	K	N	I	E	T	N	Q	I	L	F	V	Q	M	H	Y	N	E	K	I	G	K	W	Q	V	T	G	N	V	G	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		T	T	T	T	T	S			S			S	S	S			S									T	T				S	S				S										T	T	T	T