PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4h62Q_

Fold library id	PDB Header	Molecule	Title
c4h62Q_	PDB header: transcription	Chain: Q: PDB Molecule: mediator of rna polymerase ii transcription subunit 17;	PDBTitle: structure of the saccharomyces cerevisiae mediator subcomplex2 med17c/med11c/med22c

Links to external resources
Added to library: Sat Nov 3 16:02:00 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H S V K K F L R V R I F T K I E S E D D Y I L S G E S V X D R D I R K Q I Q L L K K I I F E K E L X Y Q I K K E C A L L I S Y G V S I E N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T G G G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N K V I I E L P N E K F E I E L L S L D D D L P K I N D K R A N L X L V X L R L L L V V I F K K T L R S R I S S P H G L I N L N V D D D I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S
T T T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I I R P I L G K V R F A N Y K L L L K K I I K D Y V L D I V P G S S I T E T E V E N I T K L N K E I R A F D K L L N I P R R E L K I N L P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T S T T
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 .

Sequence T E H K S P N L S L X L E S P N Y C N A L I H I K F S A G T E A N A V S F D T T F S D F K E V E D F L H F I V A E Y I Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S S S
T T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	S	V	K	K	F	L	R	V	R	I	F	T	K	I	E	S	E	D	D	Y	I	L	S	G	E	S	V	X	D	R	D	I	R	K	Q	I	Q	L	L	K	K	I	I	F	E	K	E	L	X	Y	Q	I	K	K	E	C	A	L	L	I	S	Y	G	V	S	I	E	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S													T	T		S																																							T	G	G	G	G	G	T						T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	K	V	I	I	E	L	P	N	E	K	F	E	I	E	L	L	S	L	D	D	D	L	P	K	I	N	D	K	R	A	N	L	X	L	V	X	L	R	L	L	L	V	V	I	F	K	K	T	L	R	S	R	I	S	S	P	H	G	L	I	N	L	N	V	D	D	D	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T							S	S										S	S						T	T																												T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	I	R	P	I	L	G	K	V	R	F	A	N	Y	K	L	L	L	K	K	I	I	K	D	Y	V	L	D	I	V	P	G	S	S	I	T	E	T	E	V	E	N	I	T	K	L	N	K	E	I	R	A	F	D	K	L	L	N	I	P	R	R	E	L	K	I	N	L	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																									T	T	T	T	S	T	T																				T	T					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Sequence	T	E	H	K	S	P	N	L	S	L	X	L	E	S	P	N	Y	C	N	A	L	I	H	I	K	F	S	A	G	T	E	A	N	A	V	S	F	D	T	T	F	S	D	F	K	E	V	E	D	F	L	H	F	I	V	A	E	Y	I	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S												T	T	S	S	S												T	T	T									S																T	T