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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4h5yA_

Fold library idPDB HeaderMoleculeTitle
c4h5yA_PDB header: protein transportChain: A: PDB Molecule: lida protein, substrate of the dot/icm system;PDBTitle: high-resolution crystal structure of legionella pneumophila lida (60-2 594)


Added to library: Sat Sep 28 08:55:35 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PFKTSFEKWIESSLLDPQAKEDKGSTINLGREGLKNASQVKKFLLSPAGKDVIAELGAQMALQRNINLQN
Predicted secondary structure

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Known secondary structure (DSSP)



TB
S


SSS
S

BGGGGT

ST

SSS
S

SS
TT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence QQDRMEHELFKRRLMAALFLWYLSKKSHAAEKVKEIIREYNEKAIKNAEKASSSTSQADKEIQKMLDEYE
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Known secondary structure (DSSP)

TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence QAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDS
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Known secondary structure (DSSP) TT


T




 .........220.........230.........240.........250.........260.........270.........280
Sequence EKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQE
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Known secondary structure (DSSP) TTT
TS
TTS
B
SSGGG
STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VVEHKGQFYLLQKGQWDAIKNDPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINDLIMST
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Known secondary structure (DSSP) TTTT
TT
T
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence DPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEKVTSLNDAHYVIGKDQQLFNLGGKFY
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Known secondary structure (DSSP) STTS
TTS
S
GGG
STTSSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKER
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Known secondary structure (DSSP) TTTTTT

TT
GGGGG

B
 .........500.........510.........520........
Sequence IEETKQQLEDNGKEKIEIANNISKLQSTVGVALNQLNQ
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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