PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4h2kA_

Fold library id	PDB Header	Molecule	Title
c4h2kA_	PDB header: hydrolase	Chain: A: PDB Molecule: succinyl-diaminopimelate desuccinylase;	PDBTitle: crystal structure of the catalytic domain of succinyl-diaminopimelate2 desuccinylase from haemophilus influenzae

Links to external resources
Added to library: Wed Jan 9 21:15:23 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A M K E K V V S L A Q D L I R R P S I S P N D E G C Q Q I I A E R L E K L G F Q I E W M P F N D T L N L W A K H G T S E P V I A F A G H T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
B T T
T T T T T
B T T B
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D V V P T G D E N Q W S S P P F S A E I I D G M L Y G R G A A D M K G S L A A M I V A A E E Y V K A N P N H K G T I A L L I T S D E E A T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G
S S
T T S
T T S T T T T T T
T T
S S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K D G T I H V V E T L M A R D E K I T Y C M V G E P S S A K N L G D V V K N G R R G G G K L L D S I T S A I E E T I G I T P K A E T G T S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T
B S S S T T S
S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence G R F I A L M G A E V V E F G P L N S T I H K V N E C V S V E D L G K C G E I Y H K M L V N L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S B
T T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	M	K	E	K	V	V	S	L	A	Q	D	L	I	R	R	P	S	I	S	P	N	D	E	G	C	Q	Q	I	I	A	E	R	L	E	K	L	G	F	Q	I	E	W	M	P	F	N	D	T	L	N	L	W	A	K	H	G	T	S	E	P	V	I	A	F	A	G	H	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	S			B	T	T			T	T											T	T	T								B	T	T	B									S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	V	V	P	T	G	D	E	N	Q	W	S	S	P	P	F	S	A	E	I	I	D	G	M	L	Y	G	R	G	A	A	D	M	K	G	S	L	A	A	M	I	V	A	A	E	E	Y	V	K	A	N	P	N	H	K	G	T	I	A	L	L	I	T	S	D	E	E	A	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B						G	G	G		S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	D	G	T	I	H	V	V	E	T	L	M	A	R	D	E	K	I	T	Y	C	M	V	G	E	P	S	S	A	K	N	L	G	D	V	V	K	N	G	R	R	G	G	G	K	L	L	D	S	I	T	S	A	I	E	E	T	I	G	I	T	P	K	A	E	T	G	T	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S											T	T													B	S	S	S	T	T	S					S		T	T																	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	G	R	F	I	A	L	M	G	A	E	V	V	E	F	G	P	L	N	S	T	I	H	K	V	N	E	C	V	S	V	E	D	L	G	K	C	G	E	I	Y	H	K	M	L	V	N	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T								S	B		T	T	T	T	S	T	T