Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4h04B_

Fold library idPDB HeaderMoleculeTitle
c4h04B_PDB header: hydrolaseChain: B: PDB Molecule: lacto-n-biosidase;PDBTitle: lacto-n-biosidase from bifidobacterium bifidum


Added to library: Sat Mar 23 08:36:57 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SSGLVPRGSHMGYSATAPVNLTRPATVPSMDGWTDGTGAWTLGEGTRVVSSDALAARAQSLASELTKFTD
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)









SS


TT





SS

TT


TT

STTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VDIKAATGSATGKDISLTLDASKKAELGDEGFKLNIGSKGLEVIGATDIGVFYGTRSVSQMLRQGQLTLP
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S

S


TT

GGGTTT
TTSSSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence AGTVATKPKYKERGATLCACQINISTDWIDRFLSDMADLRLNYVLLEMKLKPEEDNTKKAATWSYYTRDD
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)

S
SSSS


TT


B


STTTGGG

SS
B
 .........220.........230.........240.........250.........260.........270.........280
Sequence VKKFVKKANNYGIDVIPEINSPGHMNVWLENYPEYQLADNSGRKDPNKLDISNPEAVKFYKTLIDEYDGV
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT
SSS
TT
GGG
TTS

TT
TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FTTKYWHMGADEYMIGTSFDNYSKLKTFAEKQYGAGATPNDAFTGFINDIDKYVKAKGKQLRIWNDGIVN
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)


S


TTTTS
GGG

TT

TTT
STT


 .........360.........370.........380.........390.........400.........410.........420
Sequence TKNVSLNKDIVIEYWYGAGRKPQELVQDGYTLMNATQALYWSRSAQVYKVNAARLYNNNWNVGTFDGGRQ
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)
SSS


TTS
SS
SS
TT



GGGSS
TT



TT

TTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence IDKNYDKLTGAKVSIWPDSSYFQTENEVEKEIFDGMRFISQMTWSDSRPWATWNDMKADIDKIGYPLDIR
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)

TT
TT
SSGGGS
T



SSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence EYDYTPVDAGIYDIPQLKSISKGPWELITTPDGYYQMKDTVSGKCLALFTGSKHLDVVTQVGARPELRNC
Predicted secondary structure






















































SS confidence





































































Known secondary structure (DSSP) T

SS
S
S

GGGTTT
S


TTS
TTT




S
TT

TT




 .........570.........580.........590.........600.........610.........620.........630
Sequence ADVSVGQDQRNTANERNTQKWQIRADKDGKYTISPALTQQRLAIATGNEQNIDLETHRPAAGTVAQFPAD
Predicted secondary structure






















































SS confidence





































































Known secondary structure (DSSP)

TTS
TT
GGGT

TTS
TTT



S







TT

GG
 ..
Sequence LV
Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D