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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4gz8A_

Fold library idPDB HeaderMoleculeTitle
c4gz8A_PDB header: signaling proteinChain: A: PDB Molecule: semaphorin-3a;PDBTitle: mouse semaphorin 3a, domains sema-psi-ig


Added to library: Wed Jan 9 14:44:37 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVS
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 .........80.........90.........100.........110.........120.........130.........140
Sequence YTRRDECKWAGKDILKECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGR
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TTTTSS
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T
 .........150.........160.........170.........180.........190.........200.........210
Sequence GKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESD
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Known secondary structure (DSSP) TTS
SSSSS

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SS



SS
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SS


SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NPEDDKVYFFFRENAIDGHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDE
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 .........290.........300.........310.........320.........330.........340.........350
Sequence LQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPR
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S
TT


S
SSS

S
B
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S


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYD
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Known secondary structure (DSSP) TT



SSSS


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BBSS
B

GGGS
S
SSS


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VMFIGTDVGTVLKVVSVPLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKA
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Known secondary structure (DSSP) TTS


SSS




TTTTBSS
S

GGGS
SS
 .........500.........510.........520.........530.........540.........550.......
Sequence CAECCLARDPYCAWDGSSCSRYFPTRAQDIRNGDPLTHCSDXXXXXXXXXXXXXXXXXXXXXXXXXX
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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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